| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 43 [1] | [0] 43 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 1 (0.020) | 38 (0.970) | 33/268 | 0.1 | 98.8% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
GCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/257761‑257907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258684‑258824 GCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGCCGTTACCGAGTGGACAACAGAAGAGCAGATTGATCAAAAAATTTACCGCACTAAGCCCGTATATTCGAGAg > 2:367208/1‑142GCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGGTGCATCACAACAGGCGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATAAAAAAAATTACCGCACTAGGCCCGTAGATTCGTGAA > 1:295883/1‑143 tgTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGTAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAG < 2:247065/141‑1 aTTGTGTTAAAAATTTTCTAAATTTTTCTAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGTAATTACTTTACCTAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAG < 2:50721/142‑1 TTAAATATTTGCTAAACTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGT < 1:505093/143‑1 TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAACAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGT > 1:342754/1‑143 TAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACGTAAATACGTGAAGGAAAGTG > 2:615698/1‑143 TAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAACTTTACCGCACCAGGCCCGTATACTCGAGAAGGTAAGTGCAAAGATAATC > 2:56398/1‑143 tAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTT < 2:29478/142‑1 AATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGTCACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAATGTAAGTGCAAAAATAATCCATTATTTTTC > 1:582393/1‑143 tgCAGATGCATCACAACAGGAGATAGCAACGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCCCACTAGGCCCGTATATTCGTGAATGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGG < 2:259033/141‑1 ACAGTTGCATCACAACAGGAGATATAAATTACGTTACAGAGTGGACACTCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATGCTTTTTCGAT‑TGTCTGGC < 1:320642/143‑1 cacTTGCATACCAACAGGAGATAGCAATGACGTTACCGAGTCGACGCCCGAAGAGCAGATTGATCAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCT < 2:324643/140‑1 CAGTTGCATCACAATAGGAGATAGCAATGACGTTACTGAGTGGACATCCGAAGAGCAGATTGATTAAATAATTTTCTGCACTAGGTCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCT < 1:459482/143‑1 GTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGGGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGT < 1:332079/143‑1 TCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGT > 1:721502/1‑143 catGAGATAGCAATGTCTTTACCTAGTGTACACCCGAAGGGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTGTCGAT‑TGTCTGGCTGTATGCGTCAACGT < 1:216539/140‑1 CAGGAGATACCAATGATGTTATCGAGTGGACACTCGAAGAGCAGAGTGAACAAAAAATATACCGCACGAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGT < 1:241252/143‑1 GGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGA < 1:187408/143‑1 GCAATGACGTTACCGAGTGTACACCCTAATGCCAGATTGATCAAATAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGC < 2:792747/143‑1 tatgttGTTACCGAGAGGACAACCGAAGAGCAGATAGATCAAAAAACGTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTCCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCAC < 1:240345/137‑1 AATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCACCGTGAAACCGGCAC > 1:518639/1‑143 CGTTACCGAGTGGACACTCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA < 2:696070/143‑1 CGAGTGGACACTCGAAGAGCAGATTGATCAAAAAATATACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGT < 1:245351/143‑1 GAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTCGTTGCCCCTGGCTGTATGCGTAAACGTGAAACCGGCACCGGAAGAGCATG > 1:796448/1‑143 gtggtgtCCCGAAGAGCATATTGATCAAAAGCTTTACCGTACTAGGCCCGTATATTCGTGAAGGTAAGTGCAGAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAA < 2:424108/136‑1 GACACGTGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCTGTATATTCGTGAAGGTAAGTGTAAAGATAATCGATTCTTTTTCGAT‑TGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTC < 2:480390/143‑1 CCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATCCGTCCACGTGAAACCCGCACCGGAACTGCGCGAATTCTGcg > 1:761430/1‑141 aAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCGTGTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGT < 1:308340/142‑1 GCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGTTTCTTTTTCCAT‑TGTCTAGCTGTATACGAAAACGTGAAACCAGCACCGGAAGTGCGTGAATTCTGGGGATGGTGG > 1:317374/1‑143 GATTGATCAAAAAATTTACCTCACTAGGTCCGTATATTTGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATG < 1:446605/143‑1 ATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGGGGATGGAGCT > 1:344778/1‑143 AAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACTGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGA > 2:468742/1‑143 AAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGTAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGA > 1:327144/1‑143 AAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGAGCGTGAAATCTGCGGCTGGTGGATCGAGCTGaa > 2:415888/1‑141 acAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGTTAAGTGCAAAGATAATCGAGTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAA < 1:273709/141‑1 AAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGGTGTCTGGGGCTGGTGTGTTGTGCTGGAA > 1:58912/1‑143 AAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTCGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGTAA > 1:547933/1‑143 TTTACCGCACTAGGCCCGTATATTCGTTGAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTCTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCA < 2:755253/143‑1 gcgCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTAGGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTT < 1:731264/140‑1 CCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGACGGAACTGTGTGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAC > 1:579275/1‑143 TATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGGACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTA < 2:342754/143‑1 aaatgggGAAGGTAAGGGCAAAGAGAATCGGTTCTTTGTCGAT‑TGGCTGGCGGTATGCGCCAACGTGAAACCGGCCCCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACA < 1:96309/136‑1 taattTAAGTGCAAAGATAATCGAGTCGTTTTCGAC‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCA < 1:616370/138‑1 GTAAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTAAACGTGAAACAGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGAGCAGGAATCCCGGTTTAACTACAGTTACCAGTTT > 2:654643/1‑143 TAAGTGAAAGGAGAAGCGAGGCGTGTTCGAT‑TGTCGGGCTGTATGCGGCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG < 1:763301/143‑1 GCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/257761‑257907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAT‑TGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258684‑258824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |