| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,473,614 | C→T | W156* (TGG→TGA) | rpsG ← | 30S ribosomal subunit protein S7 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,473,614 | 0 | C | T | 97.8% | 117.7 / NA | 45 | W156* (TGG→TGA) | rpsG | 30S ribosomal subunit protein S7 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (27/17); minor base G (1/0); total (28/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACCGCGTT > NC_000913/3473479‑3473753 | gTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTGTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACGAAAACTGCGAAGGGAAAATCAACggc > 2:79785/1‑142 (MQ=255) tcaCGGTAGCGTGCAATGGGTGTTGTACGAGCCATTTTTTTCTTTTTTTATTTTTTAGGCGTTCTATTTAAGTAGCACAAAGAGAGCTGCGTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTa < 1:213665/141‑1 (MQ=255) tACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTAGCTTTTAGGCGTTCAATTGAAGTAGCCCAAGGCGGGCTGCTTCCTGGACGCGCCCGCCTGCTGCCTAAAACTCCGAAGGGATACTCAACGCTac > 1:652745/1‑142 (MQ=255) cGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGCAgcg > 2:585675/1‑141 (MQ=255) gTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTCTCTTTTACGCGTTCAATTTAAGTAGCCCAAAGCAGACTGCTTACTGGAAGCACCCGCCTGGTGACTAAAACTCCGAAGCGAAAATCAACGGTAGTGTGCGAAc > 1:615383/1‑143 (MQ=255) gTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAATTAGCCCAAAGCGGGCTGATTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAAc < 1:516881/143‑1 (MQ=255) tGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACg < 2:299740/143‑1 (MQ=255) gATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTAAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCt > 2:367201/1‑143 (MQ=255) aTGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGACGCGCCCGCCTGCTGACTAAAACTCCGAAGGGATAATCAACGCTAGTCTGCGAACGCCtt > 1:601351/1‑143 (MQ=255) tgttgtACTAGCCATTTCTTTCCTCGTTTATCTTTTAGGCTTTCAATTTAAGTAGCCCAAAGCTGGCTGCTTACTGAAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTgg < 2:9247/143‑1 (MQ=255) ccATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATa > 1:690513/1‑143 (MQ=255) ccATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCCAACGCCTTGTTGGCTTCGGCCATa > 1:780809/1‑143 (MQ=255) gTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGa > 1:130257/1‑143 (MQ=255) gTTTCCTCGTTTATCGTTCAGGCGTTCGATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGa < 2:711788/143‑1 (MQ=255) tttCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCGGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGaa < 1:623780/143‑1 (MQ=255) cGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGCGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGCCCATCCGGTGAACGTCtt > 2:177270/1‑143 (MQ=255) aTCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGt < 2:597199/143‑1 (MQ=255) ttttAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGGGATACGGTGAACGTATTCACGTTTc > 1:752918/1‑143 (MQ=255) ttttAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTCACTAAAACTCCGAAGGGATAAGCAACGGGAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGACTTCaagattg > 2:728386/1‑137 (MQ=255) ttttAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGACTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTc > 2:549029/1‑143 (MQ=255) aGGCGTTCAATTTAAGTAGCCCAAAGCGAGCTGCTTACTGGAAGCGACCGCCTGGAGACTAAAACTCCGAATGGATAATCAACGATAGTGTGCGAACGCGCTGTTGGCTTCCGCCACACTGTGAACGCCTTCATGTTTCTTaa > 2:147263/1‑143 (MQ=255) cGTACAATTTAAGTAGTCCAAAGCAGGTTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTg < 1:355542/143‑1 (MQ=255) tCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATCGTGCACGGCTTTTTTCGTGCGCCTTCCCGCCCTCAGCCATACGTTGAACGTATTCACGATTCTAAACTGAAg > 1:212582/1‑143 (MQ=255) ttAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGATTATTAACTGCAGTACCt > 1:515551/1‑143 (MQ=255) tAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTCCCTGCCGTTCCtt > 1:410706/1‑143 (MQ=255) gCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTCACTGCAGTACCATTGtttc > 2:39033/1‑142 (MQ=255) gCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGtttt > 1:308296/1‑143 (MQ=255) cagaGCGGGCTGGCTACTGGAAGAGCCCGGTGGGTGACTAAAGCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGATCGTGTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTg < 2:173014/140‑1 (MQ=255) agggggCCGCGTACAGGCAGCGCCCGCCTGGTGACTAAATCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgcag < 1:743987/140‑1 (MQ=255) gggCTGCGTACTGGAAGCGCCGGTCTGGGGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCAt < 2:734478/143‑1 (MQ=255) gctgctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGTACGTCTTCACGTTTCTTAACTGCAGTACCTGAGTTTTCTGCAGCATCa > 1:388700/1‑143 (MQ=255) ctTACTTGAGGCACCCGCATGGTGACTAAATCTTCGAAGGGATAATCAACGGTAGTGTGCGAACGCCGTGTGGGCTTCGGCCATACGGTGAACGTCTGCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGaaa < 1:220288/143‑1 (MQ=255) ctTACTGGAAGCGCCCGCTTGGTGACTAAAACTCCGAAGGGATAATCAACGGTATTGTGCGAACGCCTTGTTGGTTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGaaa < 1:51503/143‑1 (MQ=255) cTGGAAGCGCCCGTCTTGTGACTAAATCTCTGAAGGGATAATCAATGGTAGTGTGAGAACGCCTGGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAgttc < 1:478724/143‑1 (MQ=255) gctcTGGTGATTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGgc < 2:490775/140‑1 (MQ=255) gccTGGTGACTAAAACTACGAAGAGAAAATCACCGCTAGTGTGCGAACGCCTTGTTAGCTTCGGCCATACGGTGAACGTCGTCACGTTTCTTAAACGCAGTACCATTGTTTTCTGCAGCACCAGAACGTTCGTTCACCAggac > 2:426271/1‑141 (MQ=255) cTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTACTTAACTGCAGTACCTTAGTTTTCTGCATCATCAGAAAGTGCGATCGTCAGGCGCa > 2:266969/1‑143 (MQ=255) tGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTACGCAAGCCTTATTGGCTTCGGCCATACGGTGAACGTCCTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCag > 2:432422/1‑143 (MQ=255) ctcacaCTCCGAGGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCAt < 2:506121/138‑1 (MQ=255) tAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTCACTGCCGTCCCTCTTCTCCCTGCCCCCTCCGCAACTTCGCTCGCCACACGCAGAGCAATg > 1:198084/1‑143 (MQ=255) tAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCaag > 1:430198/1‑141 (MQ=255) aaCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTCCGTTCGCGAGACGCAGAGCCATGGac > 2:114024/1‑142 (MQ=255) gaggATAATCATCGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCTTACGGTGCACGTCTTCACGTTTCTTAGCTGCAGTACCGTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGTGCAGAGCCATGGATTTATCAcc < 2:124670/141‑1 (MQ=255) aTAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTGCCTGCGGTACCTTTGTTTTCTGCAGAAACAGAAAGTTCGTTCGCCAGGCGCCGAGCCCTGGATTTATCACCGCGt > 1:403009/1‑143 (MQ=255) tAATCAACGGTAGTGTGCGAACGCCTTGTTTACTTCGTCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTGCGCCAGGCGCAGCGCCACGGATCTATCACcgcgct > 2:701264/1‑141 (MQ=255) | GTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACCGCGTT > NC_000913/3473479‑3473753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |