New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1778 (61.240)	255/262	NT	98.5%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	27 (0.920)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAG  >  NC_000913/566638‑566908                                                                                                                                            |                                                                                                                                    aGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                  <  1:419152/143‑1 (MQ=255)  gATCGCAGAAATTATAGCTCACTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCGATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                 <  2:461336/143‑1 (MQ=255)             ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                                                                                                      >  2:389954/1‑143 (MQ=255)                 aGCTAAGTTCGTACTTGGAGGAGCAAGTGTAGGACGGGCAAAGCGGTAAGTATTCATTACCTGGGGAGGCATAAGAGCTTCCGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                  <  2:146682/143‑1 (MQ=255)                   cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGATGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                                >  2:325238/1‑143 (MQ=255)                               tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACGTGGGGACGCGTAAGAGCTTGTGTGCACAGGACGTTGCGGCGGTAACAGGCGCAACCGTAATCTGATGTTGCCGCGCAATAGTGGAGACCCGGCttg                                                                                                    >  2:576513/1‑141 (MQ=255)                               tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                                    <  1:79584/143‑1 (MQ=255)                                 aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                  <  2:553248/143‑1 (MQ=255)                                       gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTGCTGTGAAGAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCCGCAATAGTGGACACGCGGCCAAGTGAGTag                                                                                            >  2:380286/1‑142 (MQ=255)                                        cAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                           <  2:248998/143‑1 (MQ=255)                                            tgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                       >  1:498473/1‑143 (MQ=255)                                                  aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTACACTCacagtcc                                                                                 >  1:355161/1‑142 (MQ=255)                                                     ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                              <  1:446040/143‑1 (MQ=255)                                                       cAAAGAGGTAATTATCCATTACCTGGGGACGCATAAGCGCTTCTGCGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt                                                                            <  2:248366/143‑1 (MQ=255)                                                       cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt                                                                            <  1:362357/143‑1 (MQ=255)                                                              gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACCGGCGCGACCTTAATCTGCTCTTACCCAGCAATAGTGTACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                     <  1:423244/143‑1 (MQ=25)                                                               gaaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                    <  2:50200/142‑1 (MQ=255)                                                                aaTTATTCATTACCTGGGGACGCATAAGAGATTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                   >  1:453599/1‑143 (MQ=255)                                                                        aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaca                                                           >  1:448014/1‑141 (MQ=255)                                                                          tACCTGGGGACGCCGAGGAGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAcaca                                                         <  2:566991/143‑1 (MQ=21)                                                                             cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACTCAGCAATAGTGGACACGTGGTTAAGTGAGTAAACTCTCAGTGAGAGGTGACTCACATGACAAAAACAGTa                                                      <  1:272379/143‑1 (MQ=255)                                                                                 ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa                                                  >  1:143126/1‑143 (MQ=255)                                                                                  gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCACCTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                 <  1:482113/143‑1 (MQ=255)                                                                                     gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGACGCAACCGTAATCTGATCTTACACCGCAATAGTGAACACGCAGCTAAGTGAGAAAACTCTCAGTCAGCGGCGACTCACATGACAAAAACAGTATTAACCAg                                              >  2:435692/1‑143 (MQ=21)                                                                                        tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                           >  1:509798/1‑143 (MQ=255)                                                                                                 cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAAAGAAGAAACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCg                                  >  1:517237/1‑143 (MQ=255)                                                                                                   gtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTa                                >  1:223784/1‑143 (MQ=255)                                                                                                    tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGAGACTTACATGACAAAAACAGTATCCACCAGTAAAAAAACCCCTaa                               >  1:405241/1‑143 (MQ=18)                                                                                                       acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAGAAAACCCCGTAAACa                            >  1:27451/1‑143 (MQ=255)                                                                                                             cGTTGCCGCGGTAACAGGCGCAGCCGAAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc                      <  1:221819/143‑1 (MQ=255)                                                                                                                 cccgccgTGACAGGCGCGACCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACACTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt                  <  2:272973/142‑1 (MQ=14)                                                                                                                     cgGTAACGGGGGCACCCGTAATCTGATCTGACCCAGCAATAGTGGACACGCGGCTAAGTGAACAAACTCTCAGTCAGAGGTGACTCACATGACACAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAt              <  2:570509/143‑1 (MQ=11)                                                                                                                            aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg       >  1:508739/1‑143 (MQ=38)                                                                                                                                 gaaCCGTAATCTGGTCTTACTCATCAATAGTGGAAACAAGGAAAAGTGTTTAATCTCTCATTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAg  <  2:560676/142‑1 (MQ=11)                                                                                                                                            |                                                                                                                                    AGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAG  >  NC_000913/566638‑566908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.