New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 572471	27 (0.920)	4 (0.180) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA	3/196	NT	24.1%	coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein
	?	NC_000913	= 2170235	7 (0.240)					noncoding (65/1258 nt)	IS3	repeat region

CACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC  >  NC_000913/2170095‑2170376                                                                                                                                             |                                                                                                                                              cACCGCGATATTTTTGGCGGGCATTGATCCTGCGGCGATAAGCATTGTCGTACTGCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                                                                                             <  2:135380/143‑1 (MQ=25)    cGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc                                                                                                                                          >  1:90431/1‑143 (MQ=255)            ttgtGGCGGTCATTAATCCTTCGGCGATGAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg                                                                                                                                  <  1:492197/140‑1 (MQ=255)                                               gTCGTACTTCCGCAGTCGAGAGTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg                                                                                               <  2:181394/143‑1 (MQ=255)                                                      ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTCGACACGCGGCTAAGTGAGTAAACTCGCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAt                                                                                        <  1:12213/143‑1 (MQ=255)                                                        ccGCTGTCGACAAGAACGGTCTGATCTCACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAACACCCCGTAAACAGCATTCGCCTGAAttt                                                                                      <  1:197974/143‑1 (MQ=14)                                                           cTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc                                                                                   <  2:90431/143‑1 (MQ=255)                                                            tGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa                                                                                  <  1:399537/143‑1 (MQ=255)                                                                          gTCTGGTCGTACCGAGAAAGAGTGGACACGCGGCTAGGTGAGTAAACTCTCAGTCAGAGAGGACTCAGATGAGAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAg                                                                    <  2:145413/143‑1 (MQ=11)                                                                                                         ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaa                                     <  1:169374‑M2/143‑107 (MQ=255)                                                                                                            tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcacagcactgcaggtgcatttctgcatctgtgaaggg                                  <  2:575141‑M2/143‑110 (MQ=255)                                                                                                                  aGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaaga                            <  2:381571‑M2/143‑116 (MQ=255)                                                                                                                  aGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagataagttcacggttcccctccgcagaggtcaaacgctagatgcaaaggattgcaggtgcatttatgcagctgtgaagggagaagc                            <  2:381070‑M2/143‑116 (MQ=255)                                                                                                                                         cTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtgtggattgtatgtgcgaat     <  2:234311‑M2/143‑139 (MQ=255)                                                                                                                                            aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaaaaattgcaggtgcatttctgcatcagagacgggagaggagagtctggattgtatgtgcgcatcaa  <  2:465754‑M2/143‑142 (MQ=255)                                                                                                                                             |                                                                                                                                              CACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC  >  NC_000913/2170095‑2170376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.