| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 608008 = | NA (NA) | 7 (0.240) | 7/258 | NT | 18.9% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 839235 | 30 (1.050) | intergenic (‑28/+14) | ybiX/fiu | PKHD‑type hydroxylase YbiX/putative iron siderophore outer membrane transporter | |||||
CACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTGGAAGTC > NC_000913/839096‑839374 | cACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAGGTGGGGCCTGCGccc < 1:227543‑M2/143‑4 (MQ=255)cACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGccc > 2:574866‑M2/1‑140 (MQ=255) aCCTTGTGCGCCGGTGGTGACGCGTCCATCCAACCATTCGGCGTGGTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAACGTGGTGCATCATACAATGTCTCCAAAAAGAGGGGCCTGCGcctc < 2:535808‑M2/143‑5 (MQ=255) cTTCTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCcac < 1:250891/143‑1 (MQ=255) gtggtgACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGATGCCCTGGGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAg < 1:421815/143‑1 (MQ=255) tggtgACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGcccataagcgctaactta > 1:98610‑M2/1‑125 (MQ=255) ggtgACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGaa < 1:35738/143‑1 (MQ=255) tgACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGCGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAACGTGGGGCCTGCGcccctaagcgctacattaagg < 2:115271‑M2/143‑22 (MQ=255) tgACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACACCTGAATCAGaact > 2:545897/1‑141 (MQ=255) gTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGATATGCatat > 1:20230/1‑143 (MQ=255) tCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCaag > 2:535178/1‑143 (MQ=255) cGGCTTCTTCCATTTGGTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCTGGAATGTGGTACATCATACAATCTCTCCAAAAAGTGGGGCCTGCGcccataagcgctaacttgagggttgtggtattacgcctgata > 1:279581‑M2/1‑101 (MQ=255) gCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCaagaag < 1:340148/143‑1 (MQ=255) ttGTTCCAGTTGTTCGCGAAACCGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACACTTTCCCCCAAAAGTGGGGCCTGCGCACCACACATGAGTCCGACATGCATATTGGCTGTGAGCAAGAATGt > 1:240061/1‑143 (MQ=255) ttGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGAGcccataagcgataacttacgggagatggtataacggctgataagag < 2:157120‑M2/143‑47 (MQ=255) ccAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAACGCATATTGGCTGTGAGCAAGAAGGTTCTTg > 2:108559/1‑143 (MQ=255) cgAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAACAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGCAGGTTCTTGGCTCGCCCggg > 1:244174/1‑143 (MQ=255) cgAAAACGAGCGACGGCTTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCGAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCggg < 2:58537/143‑1 (MQ=255) aaaCGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGa > 2:19454/1‑143 (MQ=255) gAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACAGCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATGAGAACTGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGGTAAc > 1:282729/1‑143 (MQ=255) cGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcac > 2:476979‑M2/1‑71 (MQ=255) aCGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTCGGCTCGCCCGGGTGATAGCGGTAg > 2:516500/1‑143 (MQ=255) gtgGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTATCCGccct > 1:374287/1‑143 (MQ=255) gATAACACGCCGGGAATGTGGTACATCCTACAATTTCTCCGAAAAGTGGGGCCTGCGCCCGACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGACGGTTCTTGGCTCGCCCGGGTGATAACGGGAGCCGCTCttgttg > 2:383262/1‑143 (MQ=255) ctAACACGCCGGGAATGTGGTACATCATACAATTTCCCCAAACAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGttga < 1:19894/142‑1 (MQ=255) aTAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGttga > 1:488893/1‑143 (MQ=255) acGGCGGGAATAGGGTACATCATACAATTTCTCCAAAAAGTGCGGCCTCCGCCGCACATCTGAATCCGAAATGCATATGGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAg < 2:1909/143‑1 (MQ=255) acGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGCATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGCTAACGATACCCGCTCTTGTTGATTGAg > 1:89573/1‑143 (MQ=255) gCCGGGAATGTGGTACATCATACAATTTCTCTAAAAAGTGGTGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGc < 2:322673/143‑1 (MQ=255) cGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCAGATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGGTAACGGTAGCCGCTCCGCTTGAGTGAGGCGa > 1:517347/1‑143 (MQ=255) cGGGAATGTGGTACATCATACAAGTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGa < 2:319746/143‑1 (MQ=255) gTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCCCCCGGGTGGTAAAGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGt > 1:39274/1‑143 (MQ=255) aCATCATACAATTTCTCCAAAAAGTGGGGCCTGCGcccataagcgctaacttaagggttgtggtattacgcccgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaag > 1:251890‑M2/1‑35 (MQ=255) catGCAAGTTCTCCAAAAAGTGGGGCGTGCGCCCCACATCTGAAGCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTGGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCaaa < 2:263710/143‑1 (MQ=255) tACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACa < 1:19454/143‑1 (MQ=255) ttCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCGCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGt > 1:11785/1‑143 (MQ=255) tcCAAAAAGTGGGGCCTGCTCCCCACATCTCAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCTCCTGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTaaa < 1:143630/143‑1 (MQ=255) tcCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCGAACAGGTTGTaaa > 1:485610/1‑143 (MQ=255) tcCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTaaa < 1:453925/143‑1 (MQ=255) tcCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTaaa > 1:186109/1‑143 (MQ=255) cAAAAAGTGGGGCCTGCGcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatac < 1:473833‑M2/143‑126 (MQ=255) tGCGcccataagcgctaacttaagggttgtggtattacgcctgatatgatctaacgtgccgatgaactactctcacgataactggtcagcaattccggcacatacgggtaaccccgaagaactgggtccctcggcacggaacg < 2:83973‑M2/143‑140 (MQ=255) | CACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTGGAAGTC > NC_000913/839096‑839374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |