| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 39 (0.910) | 10 (0.310) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
8/214 | 2.6 | 31.6% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 18 (0.420) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
CAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572332‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGC < NC_000913/2170235‑2170197 |||||||||||||||||||||||||||||||||| catCTCCGGTGTCTTCTGCGCTAACCGGGGGCGGTTATGCGCACATACAATCCAAACGCTCTTCTCCCGTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACTTCTGCGGAGGGGAAGCGTGAACTGA < 1:588282/140‑1cagCTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCCAATGCTCTTCTCCCTTCACAGGTGCAGAAATGCACCGGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGA < 2:128314/140‑1 gacgCCGGTGACTTCTGCGCTAGACGGGGACGTTTATGCGCACATACAATCCAAACGCGCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATGCTTTGCTTCTTTCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 2:356359/139‑1 gacgCCGGTGACTTCGGCGCGAAGCGGGGACGTTTATGCGCACATACAAGCCAGACTCTCTTCTCCCTTCACAGATGCAGAGATGCACCTGCAAGTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 2:27911/139‑1 attcaGGTTACTTCTGCGCTAAACTTGGACGTTTATTGTCACATACAATCCAATCTCTCTTCTCCCTTCACATAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCTTTTGACCTCTGCGGAGGGGAAGCTTGAACTGATC < 2:612487/138‑1 actccgGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACCCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGC < 1:241512/137‑1 cggcaCTACACGGGGACGTTTGTGCGCACATACGACTCTGACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATA < 2:587510/138‑1 gccCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTCGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT < 1:239260/140‑1 cgccacACGGGGACGTTCATGCGCACATACAATCCACACTCTCTTCTCCCTTCCCAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTG < 2:182160/137‑1 ctgAACCGGGACGCTTATGCGCACATACAACCCTCACTCTCTTCTCGCTTCACAGATGCAGAAATGCACCTGCACTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGA < 2:479473/140‑1 cgtGGACGTTTATGCGCACAAACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGTGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC < 1:548157/140‑1 ggtACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGG < 1:175431/140‑1 ggcACGTTTATGCGCACATACAATCCAAACTCTCTTCCCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGG < 2:444362/140‑1 ttgATGCGCACATACAATCCGAACTCTCTTCTCCCTTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 2:334740/140‑1 ttcATGCGAACATACAATCCAAGCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 2:493492/140‑1 taggctCACATACATTTCAAACTCTCTTCTCCCTTCACAGATGCGGAAAGGGACCTGCAATCCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 2:796937/137‑1 gtTCTCTGCTGCCTTCACAGCTGGAGAAAGTCACGTGCAATTCCTTGCATCTAGCGTTTGAGCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTT < 2:221620/141‑1 CTCTTCCCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTAC < 1:96331/143‑1 TTCTGCGTTCACGGATGCAGAAATGCACTTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA < 2:567153/143‑1 TCCCTTGACGGATGCAGAAATGCACTCGCAAGTCTTTGCATCTAGCGTTTGACCTCGGCGGAGGGGAAGCGTGAGCGGATCTTACCCAGCAACAGTGGACATGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTT < 2:501696/143‑1 TTCACAGCTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 1:268956/143‑1 TTCACAGATGCAGAAATGCACCTGCAATTCGTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 1:224056/143‑1 gtCAGATACAGAACTGCCCCTGCAACTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGC < 1:576004/141‑1 |||||||||||||||||||||||||||||||||| CAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572332‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGC < NC_000913/2170235‑2170197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |