| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 609349 | NA (NA) | 17 (1.060) | 15/260 | NT | 51.5% | noncoding (1343/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 830157 = | 16 (1.000) | coding (487/672 nt) | cecR | DNA‑binding transcriptional dual regulator CecR | |||||
GTCACCGTCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTT > NC_000913/830021‑830295 | ctgacagggggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCAtt < 1:263274‑M2/7‑1 (MQ=255) cGTCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGt > 1:157196/1‑143 (MQ=255) tCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGTCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGAACAGGCGGGCGTAACGGGCGTCg > 2:257520/1‑143 (MQ=255) gccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaaccgttaagttagcgctaatggTGTCATTGGCGTCGCAg > 1:13597‑M2/127‑143 (MQ=255) ttcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttacgttagcgcttatggTGTCATTGGCGTCCCAGCCgg > 2:265464‑M2/123‑143 (MQ=255) gATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCCTGGGTATGAAGGACCATGCGGGTGTCATTGGCCTCGCAGCCgg > 1:39855/1‑143 (MQ=255) ttCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACATAATTGTTTCTTTGCGAAGACGGAACGCCCGAATCTCACGAATCGACTCACGGGGATGGAGGATCATGCGGGTGTAATTTCCCTCTCAGACGGTCCAgg > 2:108771/1‑143 (MQ=255) ggacagtatccctgacagcctacaaaacgcaattgcagaacgcgagtcatcgtcttaccgcggcaccgaggcgtcgcattcttcagatggttccacccttcagttagcgctcatggTGCCATTGGCCTCGCAGCCGGTCGAgg > 1:34615‑M2/117‑143 (MQ=255) cGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGGCCAggcg > 1:23503/1‑143 (MQ=255) cctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCa > 1:69222‑M2/99‑143 (MQ=255) aaCGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAg > 1:218437/1‑143 (MQ=255) cgcgGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGGCAggg > 1:116468/1‑142 (MQ=255) gcgGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTg < 1:276431/143‑1 (MQ=255) caaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttcagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAAGCAGGCGTGtcagcgg > 2:120301‑M2/95‑140 (MQ=255) cgGCCCAGCCGGTACGTAACAGAATCGTTTCCTTGCCAGGACGGAACGCCAGAATCGCACCAATCCACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCCGTCGGTCCAGGCGCCAATCAGGCGTGTCAGGTgg < 2:167089/143‑1 (MQ=255) gcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCGGGTCTAGGCGGCAATCAGGCGTGTCAGGTGGCtgtg > 1:248822‑M2/89‑143 (MQ=255) aattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcggcgcattcctcagatggttcaacccttaagtgagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAGTCAGGCGTGTCAGGTGGCTGGGTa > 2:221633‑M2/87‑143 (MQ=255) ttgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTGGc > 1:28275‑M2/85‑143 (MQ=255) ttgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGc > 1:305349‑M2/85‑143 (MQ=255) cGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGc < 2:130868/143‑1 (MQ=255) caCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGa < 1:290434/142‑1 (MQ=255) aagagcgcgaggcatcgtctgaacgaggcacggaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCAGTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGa < 2:157137‑M2/62‑1 (MQ=255) atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGtt < 1:37636‑M2/75‑1 (MQ=255) cttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGc > 1:94073‑M2/64‑143 (MQ=255) cGGAACGCCAGAATCTCACCAATCAACGCCTGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTa < 1:128553/143‑1 (MQ=255) accgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTGGGGGACGAATCACCGGTTGGAGCCCCGGGTGGTa > 2:12864‑M2/53‑143 (MQ=255) gAACGCCAGAATTTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAgg < 1:106051/143‑1 (MQ=255) aggctgtccAGTCACCCCATGGGTATGAAGGATCATGCGGGGTGCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTgg < 2:215843/136‑1 (MQ=255) aaTCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGGGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGGCTAATCACCTGTTCGTGCACCAGGGGGTAGGCTGCCGTgg > 1:48755/1‑143 (MQ=255) tccccAATCCACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGgaga < 1:178082/140‑1 (MQ=255) caacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACgg < 1:99477‑M2/119‑1 (MQ=255) caacccttaagttagcgcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACgg < 1:229572‑M2/119‑1 (MQ=255) gcttatggTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGa > 1:146904‑M2/9‑143 (MQ=255) gCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGGATAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGt < 2:157196/143‑1 (MQ=255) cGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGAGTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGCGGGAGAGAGCTGCTCCCGGGAGATACACTTGccgcgggc > 2:216786/1‑136 (MQ=255) | GTCACCGTCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTT > NC_000913/830021‑830295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |