| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 460,772 | T→G | 100% | S629A (TCG→GCG) | lon → | Lon protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 460,772 | 0 | T | G | 100.0% | 26.7 / NA | 13 | S629A (TCG→GCG) | lon | Lon protease |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (8/5); total (8/5) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GTTTCGACTATGGTCGCGCGGATAACGAAAACCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTTCGCTCGGCGAAGTGATGCAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAAAACTGGGGATCAACCCTGATTTTTACGAAAAACGTGACATCCACGTCCACGTACCG > NC_000913/460635‑460894 | gTTTCGACTATGGTCGCGCGGATAACGAAAACCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGAACTATACCGGTgcgccc > 2:269485/1‑141 (MQ=255)attgcgacgaGGGTCGCGCGGATAACGAAAGCCGTGGCGGTCAGGTAACTGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGTCCATTGAAACCGCTTGTGTTCCAAGTAAAGCCAAACTGACCTATACCGGTGCGCTc < 2:23448/139‑1 (MQ=255) gACTATGGTCGCGCGGATAACGAAAACCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGACGATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGa > 1:184883/1‑143 (MQ=255) cTATGGGCGCGCGGAGAATGAAAGGCGCGTGCGTCAGGTAAAAGATTTGGCGTGGGCGGAAGTGGGCGGTGACTTGCTGACCATTGAAACCGCATGTGTCCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAg < 2:110258/143‑1 (MQ=255) gcgGATAACGAAAACCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGCAGGa < 1:240572/143‑1 (MQ=255) aTAACGAAAACCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGAACATCGAAGGCGGAGTTGTTGGGGGCGAAGACAAACTGACCTATACCGGTGCGGCCGGCGAGGTGATGCAGGGGTcc > 2:141895/1‑143 (MQ=255) aaaCCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGCAGGAGTCCATTCacg > 1:91756/1‑141 (MQ=255) gTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGGCTTGCTGACCATTGAAACCGCGTGTGTTCCGGGTAAAGGCAAACTGACCGATACCGGTGCGCTCGGCGAAGTGATGCAGGAGTCCAGTCAGGCGGCGCTAACg > 2:101517/1‑143 (MQ=255) cAGGTAGGCGGTATGGCGTGGACTCGAGTGGGGGGTGTCGTGCTGACCATTGAGCCCGCATGTGTCCCGTGTTAAGGCAAACTGACCTATACCGGTGTGCTCGGCGAAGTGATGCAGGAGTTCATTCTTGCGGCGTTAACggt < 2:173160/143‑1 (MQ=255) cGGTGACGTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGCAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAAAACTGGGGATCa > 2:55504/1‑143 (MQ=255) cTTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGCAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAAAACTGGGGATCAACCCTg > 2:161286/1‑143 (MQ=255) aTTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGAAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAAAACTGGGGATCAACCCTGATTTTTACGa > 2:107703/1‑143 (MQ=255) aaCCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGCAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAAAACTGGGGATCAACCCTGATTTTTACGAAAAAc < 1:203454/143‑1 (MQ=255) gCAAACTGACCTATACCGGTGCGCTCGGCGAAGTGATGCAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAACACTGGGGATCAACCCTGCTTGTTACGAACGACGTGACATCCACGTCCACGTACCg > 2:311548/1‑143 (MQ=255) | GTTTCGACTATGGTCGCGCGGATAACGAAAACCGTGTCGGTCAGGTAACCGGTCTGGCGTGGACGGAAGTGGGCGGTGACTTGCTGACCATTGAAACCGCATGTGTTCCGGGTAAAGGCAAACTGACCTATACCGGTTCGCTCGGCGAAGTGATGCAGGAGTCCATTCAGGCGGCGTTAACGGTGGTTCGTGCGCGTGCGGAAAAACTGGGGATCAACCCTGATTTTTACGAAAAACGTGACATCCACGTCCACGTACCG > NC_000913/460635‑460894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |