New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2288 (42.440)	254/262	NT	97.8%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	52 (0.960)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCC  >  NC_000913/566637‑566911                                                                                                                                             |                                                                                                                                       aaGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                                      <  2:390926/143‑1 (MQ=255) aaGATCGAAGTATGTAAGGCTAAGTTAGGATTGTATGGATCAATTGTAGGACGGGCAAAGAGTTAATTTTTCATTGCTTGGGGACGAATAAGAGTTTTTGTTCATAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                                      <  2:605475/143‑1 (MQ=255)  aGATCGCATAAATTAAAGCTAAGTTCGGACTTAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                     <  2:109433/143‑1 (MQ=255)  aGATCGCAGAGATGAAAGCTAAGTTCGGACGGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATGATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGACGTGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                     <  2:939244/143‑1 (MQ=255)        cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                               <  1:623742/143‑1 (MQ=255)           aaaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg                                                                                                                            >  1:1000977/1‑143 (MQ=255)             aTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCa                                                                                                                          >  2:571032/1‑143 (MQ=255)              ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGCACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAACTTACCCAGCaa                                                                                                                         >  2:914219/1‑143 (MQ=255)              ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAAAGGCAATTATTCATTACCTGGAGACGCATAAGAGCTTCAGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGGAATCTGATCATACCAAGCaa                                                                                                                         >  2:644337/1‑143 (MQ=255)                aaaGCTAAGTTCGTACTGAAAGTAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGAGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                                                                                                       <  2:245056/143‑1 (MQ=255)                   gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATCCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGCAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                    >  2:44956/1‑143 (MQ=255)                        gTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGacac                                                                                                               >  2:154087/1‑143 (MQ=255)                         ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCACCCGTAATCTGATCTTACCCAGCAATAGTGGACAcg                                                                                                              >  1:557907/1‑143 (MQ=255)                           cGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACCGGCGCAACCGTAATCTGATCTTACCCAGCACCAGTGGACCcgcg                                                                                                            >  2:110831/1‑143 (MQ=255)                            ggACTCAAAGGAGCAAGTGAAAGACGGGAAAAGAGGCAATAATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCGCAGGACATTGCCGCGGTCACAGGCGCAACAGTAAACTGATCTAACCCAGCAAGAGTAGAGACGCgg                                                                                                           >  2:526822/1‑143 (MQ=255)                               cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAGCTTACCCAGCAAGAGTGGACGCGCGGCTa                                                                                                        >  1:782582/1‑143 (MQ=255)                                tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATGGGGGAGACGCgggtga                                                                                                       >  2:30964/1‑139 (MQ=255)                                 gacaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg                                                                                                      <  1:156952/140‑1 (MQ=255)                                  aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                     >  1:103551/1‑143 (MQ=255)                                      gAGCAGGTGGATGGCGGGGGGAGGGGCAGTTATGCATGACCTGGGGATGGATAAGAGCTTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAGCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt                                                                                                 <  2:579415/143‑1 (MQ=25)                                      gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATCAGAGCTTCTGTGCACAGAACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt                                                                                                 >  2:592987/1‑143 (MQ=255)                                         cgaGTGTGTGACGGGCAAAGAGGCAGTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                              <  2:529137/141‑1 (MQ=255)                                         cAAGTGTATGACGGGCAGAGAGGCAATTATTCGTGACCTGGGGACCCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                              <  2:1012963/143‑1 (MQ=255)                                          aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                             <  2:537782/143‑1 (MQ=255)                                               tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                        >  1:917539/1‑143 (MQ=255)                                                     gggCAAAGAGGCAATAATCGATTACCTGGGGATGCATAAGGCCTTCTGTGCACATGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga                                                                                  <  2:219032/143‑1 (MQ=25)                                                      ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCATCAGCATTATAATTTGACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                                 <  1:449190/143‑1 (MQ=37)                                                      cgCAAAGAGGCAATTATTCATTCCCTCGGCACGCAAATGAGTTTTTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                                 <  1:195157/142‑1 (MQ=25)                                                       gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg                                                                                >  1:357/1‑143 (MQ=255)                                                       gCAAAGAGGCAATTATTCATTACCTGGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCAAGCAATAGTGGACACGCGGCGAAGGGAGTAAACACTCAGACataga                                                                                >  2:963262/1‑142 (MQ=255)                                                         aaaGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCTCAGTCAGAGGTg                                                                              >  1:437520/1‑143 (MQ=255)                                                             agGCAATTATTCATTACCTGGGGACTCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAAGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACtg                                                                          >  2:276263/1‑142 (MQ=255)                                                                       tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGTCTCAGTGAGTAAACTCTCAGTAACAGGTGACTCACATGCCaaa                                                                >  1:516994/1‑143 (MQ=25)                                                                       tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa                                                                >  2:119398/1‑143 (MQ=255)                                                                           tACCTGGTGACGCATAAGAGCTTCTGTGCACATTTCGTTGCCGCTTTAACATGCGTTACCGTAATCTGATCTTACCCAGAAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                            <  1:186224/143‑1 (MQ=18)                                                                            acatGGGGAGGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg                                                           <  2:110011/140‑1 (MQ=255)                                                                              cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCCACCGGAATCTGATCTTACCCAGCAATAGAGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAACACCGTa                                                         >  2:1029172/1‑143 (MQ=21)                                                                                ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAACTGAGTCAACTCTCCGTCAGAGGTGCCTCACCCGACAAAAACAGTATc                                                       >  1:675703/1‑143 (MQ=25)                                                                                  ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa                                                     <  1:571032/143‑1 (MQ=255)                                                                                     cGCATAAGAGCTTCTCTGCACAGCACGTTGCCGCGCTACCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                                  <  1:1042960/143‑1 (MQ=255)                                                                                      gCATAAGAGCTTCTTTGCACAGGACGTTGCCGCGGTAACAGGAGCAACCGAACTCTGCTCTTACCCCGCAGTAGGGGACACGCGGCTAATTGAGTTAACACACAGGCAGAGCAGACGCACACGCCGAGACAAGGATCAACCat                                                 >  2:655182/1‑142 (MQ=255)                                                                                        aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                               >  2:1009177/1‑143 (MQ=255)                                                                                           agagCTTCTGTGCACAGGACGTCGCCGCGGTAACAGGCGCAACCGCAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCCCAGTAAGAGGCGACTCACATGACAAAACCAGCAACAACCAGTaaaa                                            >  2:471854/1‑143 (MQ=18)                                                                                               cTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc                                        >  1:857856/1‑143 (MQ=255)                                                                                               cTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACACGACAAAAACAGTATCAACCAGTAAAAAAcc                                        >  1:866739/1‑143 (MQ=255)                                                                                                     tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaa                                  >  2:371019/1‑143 (MQ=255)                                                                                                      gCAGAGGGCGTTGCGGGCGTAACAGGCGCGACCGTAATCTGAGCTTACCCAGCAATAGTCGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                                 <  2:1026489/143‑1 (MQ=14)                                                                                                      gCACAGGACGTTGCCACGAAAACAGCAGCAACCATAATCTGATCTTACCCAGCAATAGAGGACACACGACTAAGTGAGTAAACTCTCAGACAAAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                                 <  2:838062/143‑1 (MQ=14)                                                                                                         caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGAGAGTCAACACTCAGTCAGAGGTGACCCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg                              <  2:789284/143‑1 (MQ=17)                                                                                                            gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAGCTCTCAGTCAGAGGTGACTCAAATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt                           >  1:601838/1‑143 (MQ=255)                                                                                                            gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAGCCAGTAAAAAACACCGTAAACAGCAt                           >  2:949151/1‑143 (MQ=255)                                                                                                             aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACGCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAACAGTAAAAAACCCCGTAAACAGCaat                          >  1:43544/1‑141 (MQ=255)                                                                                                             aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAACCAGCAtt                          >  2:551689/1‑143 (MQ=255)                                                                                                             aCGTGGCCGCGGGAACAGTCGCAACCGCAATCTCCACTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAACACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt                          <  1:991510/143‑1 (MQ=14)                                                                                                                        gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAttt               >  1:426273/1‑143 (MQ=255)                                                                                                                          aaCAGGCGCAGCCGTAATCTGATCTTACCCAGCAATAGGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg             <  2:696973/143‑1 (MQ=255)                                                                                                                          aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg             <  1:154087/143‑1 (MQ=40)                                                                                                                           aCAGGCGCAACCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc            <  1:623827/143‑1 (MQ=255)                                                                                                                           aCAGGCGCAACCGCAATCTGAGCTGACCCAGCAGTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc            <  2:242948/143‑1 (MQ=255)                                                                                                                            cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa           <  1:914219/143‑1 (MQ=38)                                                                                                                             aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACACAAACATTATCAACCCGTAAAAAACCCAGTAAACAGCATTCGCCTGAATTTCGCAg          >  1:633133/1‑143 (MQ=255)                                                                                                                              ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt         >  1:903612/1‑143 (MQ=37)                                                                                                                               ccccAACCCTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg        <  2:917539/140‑1 (MQ=17)                                                                                                                                    aCCGTAAACTGATCTTACCCAGCAATAGTGGACACGCCGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc   <  1:342526/143‑1 (MQ=17)                                                                                                                                     ttatAATCTGATCTTACCCACCAATAGTCGACACGCGACTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc  <  2:391448/140‑1 (MQ=0)                                                                                                                                     ccGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc  >  1:1032288/1‑143 (MQ=31)                                                                                                                                             |                                                                                                                                       AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCC  >  NC_000913/566637‑566911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.