| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 52 (0.960) | 15 (0.370) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
11/196 | NT | 33.1% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 30 (0.550) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170093‑2170376 | agcACCGGGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 2:149967/141‑1 (MQ=255) cGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 2:840157/1‑143 (MQ=255) atTTTTGGCGGTCATCAATCCTTCGGCGATAAGCATTTTCGTACTTCAGCTGTCGAGCATAACTGCCTGATCTTCCCCAGCAATGTTGGACACGCGTCTAAGCAACTAAACCCCCAGCCAGCGGGGCCTCCCATGACAGAAAc > 2:346347/1‑143 (MQ=255) tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAGTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa < 1:306753/143‑1 (MQ=255) tttttGGCGATCATTAATCCTTCGGCGATAAGCATTGTCGTACTGCCGCTGTCGAGAAGAACGGTCTGCTCTTACCCAGCAAGAGTGGAAACGCGGCGATGTGAGTGGACCCCCAGTCAGAGGAGACACACATGAccacaagc > 2:172955/1‑136 (MQ=255) ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 2:431501/143‑1 (MQ=255) ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 1:927854/143‑1 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTT‑CCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTCGCAACCa > 2:1010715/1‑143 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACCAAGACAGTAGCAACCAg > 1:772204/1‑143 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAGACCAGTATCAACCGGt > 1:923964/1‑143 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGt < 1:722037/143‑1 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaa < 2:40682/143‑1 (MQ=255) ttCTGCGATAAGCATTGTCGTACTTCCGCTGTCGTTAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc < 1:66790/143‑1 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGATGTCGAGAATAACGGTCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCACAGGTAGAGGTGAATGACATGACAAAAACAGTATAAAACAGTAAAAAAcc > 2:816230/1‑143 (MQ=18) ttCGGCGATAAGCAGTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc < 1:645104/143‑1 (MQ=255) gCGATAAGCATTGGCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt < 2:903489/143‑1 (MQ=255) cGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTa < 1:840157/143‑1 (MQ=255) aTAAGCATTTTCGTACTCCCGCTGTCGAGAATAACGGTATGAGCTTACCAAGCAATAGAGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 1:105298/143‑1 (MQ=17) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGGCTCGCGTGACAAAAACAGTATCAACCAGTAAAAACCCCCGTaca > 2:1072370/1‑141 (MQ=255) tGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAACCCGCCTTc > 1:35640/1‑143 (MQ=255) tCGTACTTCCGCTGTCGAGAAGAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAAAGCATTCGc > 2:953466/1‑143 (MQ=255) tCGGACTGCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:181910/143‑1 (MQ=255) cTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc < 1:976979/143‑1 (MQ=255) cTGTCGACAATACCGGTCTGATCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc < 1:9090/143‑1 (MQ=255) tCGAGAATAAGGGTCTGAGACTCCACAGTAAGAGTGGAAACACGGCTAATCGAGTAAACTCTTAGGCAGATGTCACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt < 2:376539/143‑1 (MQ=11) cGAGAATAGCCGTCTGATCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg < 2:815133/143‑1 (MQ=255) cGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg < 2:1063819/143‑1 (MQ=39) gaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAGTCGCCTGAATTTCGCAGTGAAg > 2:908110/1‑143 (MQ=37) gtggtagTCTGATCTCACCCGGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc < 2:36982/137‑1 (MQ=0) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTCAACAGCATCCGCACGAATTTCGCAAGGACGCCCt > 2:358541/1‑143 (MQ=11) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGGATTTCGCGGTGAAgacgtg > 1:389094/1‑138 (MQ=255) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCACGAATTTCGCAGGGGAGCCCAGa > 1:128681/1‑143 (MQ=11) ggTCTGATCTTACCCAGAAATAGTGTACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGaa < 1:601473/143‑1 (MQ=14) gcgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagctcagttcacgcttcccctccgcagaggtcaaacgctagatgcacagaattgcaggtgcatttctgcaactgtg < 1:136551‑M2/143‑105 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgccagatgcaaagaatcgcaggtgcatttctgcatctgtgaa < 2:941348‑M2/143‑107 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatccaaagaactgcaggtgcatttcggcgtccgggaagc < 2:425661‑M2/143‑109 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaggatcagttcacgcttcccctccgcagagggcaaacgctagatgcaacgaattgcaggtgcctttctgcctctgtgacggg < 1:596088‑M2/143‑110 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaaggg < 1:649150‑M2/143‑110 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaaggg < 1:585734‑M2/143‑110 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagctgcaaagactcgcaggtgcatttctgcatctgtgaagggagaa < 2:670789‑M2/143‑114 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttaaccgcgtgtccactattgctaagtaagatcagttcacgcttcccctccgcagaagtcaaacgctagatgcaaagaattacaggtgcatttctacatctgtaaaaggagaa < 2:952890‑M2/143‑114 (MQ=255) gAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaag < 1:818881‑M2/143‑115 (MQ=255) gTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagcggag < 1:318386‑M2/143‑117 (MQ=255) gTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagag < 1:300807‑M2/143‑117 (MQ=255) aaaCTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctcgatgcaaagaattgcagttgcctttctgcctctctgaagggcgaagcgag < 1:819069‑M2/143‑119 (MQ=255) ctctCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagttt < 1:732316‑M2/143‑122 (MQ=255) gggtGACTCACttagccgcgtgtccactattgctgggtaagttcagttcacgcggcccgtccgcagaggtcaaacgctagatgcgaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgt > 2:361145‑M2/2‑11 (MQ=255) ttgACGCACttagccgcctgtccgcgattgctgggtcagatcagttcacgcttcccctccgcacaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggacaagagagtttggattgtatgtgc > 2:743862‑M2/2‑9 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggggaggagagtttggatggtatgtgcgcgta < 2:112866‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcagtactgcatctgtgaagggagaagagagtttggattgtatgtgcgcgta < 2:92355‑M2/143‑140 (MQ=255) cACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagtagagagctcggacggtatgagcgcgtat < 1:719411‑M2/143‑141 (MQ=255) aCttagccgcgtgtccactattgctaggtaagatcagttcacgcttcccctccgcagcggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgcagggagaagagagtttggcttgtatgtgcgcatcaa < 2:1056076‑M2/143‑142 (MQ=255) | ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170093‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |