Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 594,948 | G→C | 7.7% | Q166E (CAG→GAG) ‡ | cusR ← | DNA‑binding transcriptional activator CusR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 594,948 | 0 | G | C | 7.7% | 135.3 / 4.6 | 53 | Q166E (CAG→GAG) ‡ | cusR | DNA‑binding transcriptional activator CusR |
Reads supporting (aligned to +/- strand): ref base G (29/19); new base C (2/2); total (31/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.34e-01 |
GAATTAGCTTCGGCTCAAAGTCGTTGTCGATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGAAACTGACTTTCGATAATCACCGCCGCCCC > NC_000913/594810‑595089 | gAATTAGCTTCGGCTCAAAGTCGTCGTCCATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATgg < 1:482712/143‑1 (MQ=255) aGCTTCGGCTCATAGTCGTTGTCGATTGTGGCGCGCAGGCGCGTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATCCCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCATCAGGGCgaag < 2:841687/143‑1 (MQ=255) aGCTTCGGCTCAAAGTCGTTGTCGAGTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATGGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCATCAGGGCgaag < 1:1029962/143‑1 (MQ=255) cctccGGCTCAAAGTCGTTGTCGATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCgaagg < 1:1048238/139‑1 (MQ=255) ggCTCAAAGTCGTTGTCGATTTTTCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTTGTATCTCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGgaagaa < 1:261487/143‑1 (MQ=255) ggCTCAAAGTCGTTGTCGATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGgaagaa < 2:652467/143‑1 (MQ=255) caacgccGTTGGCGCTGTTGCCGCGCAGCCGCCTCACCGCCACATCAATAGCATTGGTATCGCTGTGAAAATTCATGTCCCATACCTGCCAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTcc < 1:550826/137‑1 (MQ=255) aaaGTCGTTGTCGATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGGTGGCGAAGGAAGAACTCca > 1:46946/1‑143 (MQ=255) tCGATTTTGCCGAGCAGACGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGAGACAGCACTACACCCTGATGGCGAAGGAAGAACTCCAGCAGAGCaaa > 2:1067854/1‑143 (MQ=255) gctttcGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCAAGAAGCTAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAAct < 1:402127/141‑1 (MQ=255) gATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAGGGAAGAACTCCAGCAGAGTacacc > 1:265882/1‑142 (MQ=255) gATTTTGCCGCGCAGCCGCTTAACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGCAGAACTGCAGCAGAGTAAAca > 2:749617/1‑142 (MQ=255) aTTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGCGGCAGCACTTCGCCCTGATGGCGCAGGAAGAACTCCAGCAGAGCAACctc > 1:193608/1‑143 (MQ=255) gCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTGT‑TTAc > 2:959103/1‑143 (MQ=255) ccGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACt > 1:988127/1‑143 (MQ=255) cgcGCTGCACCGCCACCTCAATAGCATTGGGATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCaaa < 2:265882/141‑1 (MQ=255) ccGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTACACTCT‑TTACTGGTCAAAg > 1:859570/1‑143 (MQ=255) cTTCGCCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGa < 1:938086/143‑1 (MQ=255) cacaTCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGc > 2:973180/1‑143 (MQ=255) caTTAATAGCATGGGTATCGCTGTCAATATTCTTGTCCCATACCTGCGAGGCGATAAGCGGGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCg < 2:631852/143‑1 (MQ=255) aaTAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATAGCGAAGGAAGAACTCCAGCAGAGTAAACAAA‑CAACTGGTGATAGGGATGCGCGTGCCGCTGc > 1:538948/1‑143 (MQ=255) ttGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGCGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCGGCTGCGGGTGaa > 2:347783/1‑142 (MQ=255) ttGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGCCGAAGGAAGAACTCCAGCAGAGCAAACTCT‑TCACTGGTCAAAGTGATGCGCGTCCCGCTGCggcccac > 1:421586/1‑138 (MQ=255) ggTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACtt > 2:1009845/1‑143 (MQ=255) gtCGCTGTCAAAACTCATGTCCTCTACCTGCGAGGCGATAAGCGAGCGAGGCACCACTTGATCCTTATGGCGAAGGAAGAACTTCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGc < 2:930152/142‑1 (MQ=255) agcgttgtgAAAGTGCACGTCCCATACCTGCGAGGCGATAAGCGGGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGc < 2:916056/138‑1 (MQ=255) gCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGc > 2:823535/1‑143 (MQ=255) cTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCCGCAGAGTAAACTCT‑TTACTGGTCAACGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCt > 1:73950/1‑143 (MQ=255) gTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGa < 1:53246/143‑1 (MQ=255) aaaaTTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCCAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGTGCCTGACga > 2:712197/1‑143 (MQ=255) aaaaTTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTAATGGTCAAAGTGATGCGCGTGCCGCTGCGGGGGACTTGGCGGCGGACga > 2:810560/1‑143 (MQ=255) aaaTTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCGGACgag > 2:338675/1‑143 (MQ=255) aaaTTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCG‑TTACTGGTCAAAGTAATGCGCGTGCCGCTGCGGGGGACTTTGCGGCTGACgag > 2:540138/1‑143 (MQ=255) aaTTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACgaga < 1:507123/143‑1 (MQ=255) aTTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAG‑ACACGATGCGCCACCTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGAt > 1:1064885/1‑143 (MQ=255) tCATGTCCCGTACCTGCGAGGCGATAAGCGAGCGGGGCAGCACCTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCg < 1:715424/143‑1 (MQ=255) tCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCGGAGGAAACTCT‑TTACTGGTCGAAGTGAGGCGCGCGCCGCTGCGGGTGACTTCGCGGCCGACGAGCTCGAccct > 1:665386/1‑141 (MQ=255) ccTCCGAGTCGAGACGCGAGCGGGTCAGCACTCCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAAGTCT‑TGACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCg < 2:147845/143‑1 (MQ=255) tGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGACGAACTCCAGCAGGGCAAACTCT‑TTACTGGTCAAAGTGATGCGCGCGCCGCTGCAGGTCACGATCCGTCTGCCGAGCTCGACCACCACCTCGGc > 1:829823/1‑143 (MQ=255) aGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGCCTTCGCGGCTGGCGAGATCGACCACCAAATCGGCAAcc > 2:365627/1‑143 (MQ=255) cGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGa > 2:721805/1‑143 (MQ=255) gATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGaa > 2:138932/1‑143 (MQ=255) tAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCACATCGGCAACCTGAAAc > 1:887109/1‑143 (MQ=255) gcgagcgGTGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGAAACTGa < 1:106382/143‑1 (MQ=255) gcgagcgGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGAAACTGa < 1:1068689/143‑1 (MQ=255) gggcgGGGCAGCACTTCGCCCTGAGGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGAAACTGACt < 2:1014853/141‑1 (MQ=255) agcgGGGCAGCACTTCGCCCTGCTGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTCTGCGGCGGCCGAGATGGACAATCCAATCCGCAACCTGaaagcaactt > 2:213320/1‑136 (MQ=255) ggggCAGCACTGCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAAGCGGCAACCTGAAACTGACTTTCg < 1:263910/143‑1 (MQ=255) agcaCTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGAAACTGACTTTCGATAAt < 2:46946/143‑1 (MQ=255) ccTTCGCCATCAGGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGCGACATACCACCATATCGGCACCCTGCAACTGACTTTCGATAATCAc > 2:754720/2‑143 (MQ=255) cTTCGCCATCAGGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGCCGCGATCGCCCATCGACTCGGCTGCCTCAAACTGGCTTTCGGTAGTCAcc > 1:299063/1‑143 (MQ=255) ccTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCCACCGGAAACTGACTTGCGATAATCACCgccgcc > 2:750280/1‑143 (MQ=255) tGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGGCCTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTCAAACTGACTGTCGATAACCACCgccgccac > 2:806442/1‑141 (MQ=255) | GAATTAGCTTCGGCTCAAAGTCGTTGTCGATTTTGCCGCGCAGCCGCTTCACCGCCACATCAATAGCATTGGTATCGCTGTCAAAATTCATGTCCCATACCTGCGAGGCGATAAGCGAGCGGGGCAGCACTTCGCCCTGATGGCGAAGGAAGAACTCCAGCAGAGTAAACTCT‑TTACTGGTCAAAGTGATGCGCGTGCCGCTGCGGGTGACTTTGCGGCTGACGAGATCGACCATCAAATCGGCAACCTGAAACTGACTTTCGATAATCACCGCCGCCCC > NC_000913/594810‑595089 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |