| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 9,908 | G→T | 7.1% | intergenic (+15/+20) | mog → / ← satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 9,908 | 0 | G | T | 7.1% | 137.2 / 3.2 | 58 | intergenic (+15/+20) | mog/satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base G (24/29); new base T (2/2); total (26/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-01 | |||||||||||
CACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGGAT > NC_000913/9771‑10047 | cgcagTATTGTTGCACGCGAAGGGTACTGCAATCAGTTGCTGGAAGGGACATACGATGAAACGGCACCGGAAGTGGTAGAAGCATTCAGACCGAAGAGTGCAAGACGAGACGTTAGCGAATAAAAAAATCCCCCCGAGCgggg < 2:664796/139‑1 (MQ=255) acGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCggggg < 1:1045911/143‑1 (MQ=255) cGGTATTTTTGCCAGCGTACCGTACTCCATTAACCCGATGGAAGTGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCgggggg < 1:1012090/143‑1 (MQ=255) ggttttgGCCGGCGTTCCGTACTGCAGTCAGTGGGTGGAAGGGCCATCCGTTGAGACGGCACCGGAAGTGGTTGCAGCACTCAGAGCGACGAGTGGAAGACGCGACGTTAGCGAATAAAAAAATTCCCCCGCTCGGGGGGAtt < 2:866913/141‑2 (MQ=255) aTTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCTCGGGGGGAttt < 1:868942/143‑3 (MQ=255) tttGCCATCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTTAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCaa < 1:367283/143‑1 (MQ=255) tttGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGCATAAAAAAATCCCCCCGAGCGGGGGGATCTCaa > 1:465685/1‑143 (MQ=255) ttGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCGCGGGGGGTTCTCaac > 1:700755/1‑142 (MQ=255) ttccAGCGTACCGTACTGCAGTCAGTTGCGGGAAGGGCCACACGTTGAAAGGGCACCGGCAGTGGTTGCAGCATTCACACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCaaaa < 1:956737/141‑1 (MQ=255) cgtactgtatTGCATTTAGTTGCTGGAAGTGCCATACGTTGAAACGGAACCGGAAGTGGATGCAGCATGCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTa < 1:874036/143‑1 (MQ=255) accgttcTGCATTCAGTTGCTGGAAGGGCCATACGTTGACACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTg < 1:1050166/143‑1 (MQ=255) cgtacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTggg < 1:672084/143‑1 (MQ=255) cgtacTACATTAAGTTGCTGGAAGGGCCATACGTTGAAACGACACCGGAAGTGGTTGCAGCATTCAGACAGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATACCCCCGAGCCAGGGGAACACAAAACAATCAGTggg > 2:356002/1‑143 (MQ=255) tacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGCGGGaa > 2:202451/1‑142 (MQ=255) tGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAGTTAGTGGGATTCa > 1:714737/1‑143 (MQ=255) tGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCa < 2:603662/143‑1 (MQ=255) tGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCa > 1:208629/1‑143 (MQ=255) aTTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCa > 2:616007/1‑143 (MQ=255) tgcgtgAAGGGCCATACGTCGACACGGCACCGGAGGTGGTTGCTGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCa < 2:49536/138‑1 (MQ=255) tGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTAAGCGAATAAAAAAATCCCCCCGACCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCa < 1:709317/143‑1 (MQ=255) aaGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGCGGGAGTCACCAATCCGCAGAACgg > 2:904259/1‑143 (MQ=255) ctaTACGTGGAAACGGCACCGGAAGTGGTGGCAGCATTCAGACGGTGGCGTTCAAGACTCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGa < 1:779051/141‑1 (MQ=255) ccATACGTTGAAACGGCACCGGCAGTCGTTGCAGCATTCAGACCGAAGAGTGCAAGACCCGACGCTAGCGCATAAAAAACTCCCCCCGAGCGGGGGAACCTCACAACAATCAGGCGGATCCACCACTCGCCAGAACgcacaca > 2:882931/1‑137 (MQ=255) cATACGTTGAAACGGCACCGGAGGTGGTGGCAGAATTCCGACCGAACAGTCCAAGACGCTACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGAc < 2:171507/143‑1 (MQ=255) aTACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGagc > 1:938203/1‑141 (MQ=255) gTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAGAAATCCCCCCGCGCGGGGGGATCTCAAAACATTTAGTGGGATTCACCCATCGGCTGTGCGATGCGTCCCAAc > 1:38195/1‑143 (MQ=255) ttGAAACGGCACCGGACGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGCCGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACCATTAGTGGGATTCACCGATCGCCAGAACGGTGCGACGAAACt > 2:895557/1‑143 (MQ=255) ttGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGCTTCACCAATCGGCAGAACGGTGCGACCAAACt > 2:342029/1‑143 (MQ=255) aCGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACAAATCGGCAGAACGGTACGACCAAACTGCTCg > 2:1018406/1‑143 (MQ=255) gCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCACGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 1:70237/143‑1 (MQ=255) cACCGGAAGTGGTTGCAGGAGTCAGACCGAGGGGTGCAAGGCGCGACGTTAGCGAATAAAAAGAGCCCCCCGAGCGGGGGGATCTCAAAACAATTAGGGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCa < 2:498232/143‑1 (MQ=255) cACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCa < 1:999225/143‑1 (MQ=255) aCCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATAAGTGGGATTCACCAATCGGCAGAACGGTCCGACCAAACTGCCCgaccag > 2:684514/1‑138 (MQ=255) ccGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGGAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGGTCGCAAAACAAGTAGAGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGt > 2:649115/1‑143 (MQ=255) cGGAAGTGGTTGCAGCATTCAGAGCGCTGAGCGAAGCGCGCCACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCACGCGGCAGCACGGTGCGACCAGACTGCGCGCGCAGtc > 2:590251/1‑142 (MQ=255) cGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa < 1:651860/143‑1 (MQ=255) gcggTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa < 1:248144/141‑1 (MQ=255) tGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAACAAAATCCCCCCGAGCGGGGGGATCTCACAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCACACTGCTCGTTCAGCACGTCAc > 2:1057112/1‑143 (MQ=255) tGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGGTCAGTACTTTAc > 2:141886/1‑143 (MQ=255) tGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTACGACCAAACGGCTCGTTCAGCACTTCAc > 2:461376/1‑143 (MQ=255) ggTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAcc < 1:461356/143‑1 (MQ=255) gcaTTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGcc > 2:540683/1‑143 (MQ=255) gACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTCCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCagataga > 1:1004346/1‑143 (MQ=255) ccGCAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAACTAGTGGGCTTCACCAATCGGCAGAACGGTGCGACCAAACTCCTCGTCCCGTACTTCCCCCATCGCACGACAGAtt > 2:895989/1‑143 (MQ=255) agtgTGCAAGCGGCGGGGTTACAGAATAAAAAAAGCCCCCCGGGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTgcgc < 2:167027/140‑1 (MQ=255) gCAAGGCGCGACGTTAGCGAATAAAAACATCCCCCCGAGCGGGGGGATCTCAAAGCAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCa < 1:1039649/143‑1 (MQ=255) gCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCa < 1:1045578/143‑1 (MQ=255) agcggcgACGCTAGCGAAGAAAGAGCGCGCCCCGGGCGGGGGGATCTCGAAGCAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGGACTGCACCCATCGCCAGATAGATTGCGCTGGCACCg < 2:847095/139‑1 (MQ=255) tcgctAGCGAATACAAACGTCCCCCCGCGCTGCCGGATCTCAACACACTTCGTGCGATTCACCAATCGGCAGCACGGTGCTCCCAAACTGCTCGTTCAGCACTTCACCCGTCCCCAGATAGATTGCGCTGGCACCGCAGATCa < 2:777663/139‑1 (MQ=255) acggtggCGAATAAAAAAAGCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCa < 1:522038/137‑1 (MQ=255) tAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAg > 1:1029454/1‑143 (MQ=255) gaTCCCCCCGCTCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCa > 1:839222/2‑143 (MQ=255) aTCCCCCCGCTCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCaa > 1:871816/1‑143 (MQ=255) acccaccGCGCGGGGGGAGCTCAAAACCACTAGTGGGAGTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCaaa < 1:171322/142‑1 (MQ=255) cccccTAGCTGGGGTGTCTCAAAACAATTATTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTTAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGt < 2:150824/143‑1 (MQ=255) cccccTAGCGGGGGGATCTCAAAACCATTAGTGGGATTCACCGATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGCTAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGt < 2:540748/143‑1 (MQ=255) ccGAGCGGGGGGATGCCGGGGCAGTGAGTGGGCTGCACCAATCGGCGGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGAGTGCGGTGGCACGGCAGATCAGCCCAATCCAGCCGGCAAAGTGga < 2:559284/143‑1 (MQ=255) cGAGCGGGGGGATCTCAAAACAAGTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGgat < 2:700755/143‑1 (MQ=255) | CACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGGAT > NC_000913/9771‑10047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |