Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,440,791 | C→T | 100% | intergenic (‑7/‑267) | ydbK ← / → ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,440,791 | 0 | C | T | 100.0% | 127.7 / ‑6.7 | 45 | intergenic (‑7/‑267) | ydbK/ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (31/12); total (32/13) | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTTAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACA > NC_000913/1440651‑1440928 | tttAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACAtcc > 1:603043/1‑143 (MQ=255) tttAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACAtcc > 1:28365/1‑143 (MQ=255) tAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCtt > 1:883276/1‑143 (MQ=255) aaGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACAGGGGGCAATACGGCAGATGACGATAACTTCACTGGTGCGAACTGCGACCGAACCAACCGCGCCATTACCGTCACCAGTCACACTATGACATCCtca > 2:959500/1‑141 (MQ=255) aGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAACCATATGACATCCTTAc > 2:230569/1‑143 (MQ=255) gCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACCTCCTTACa > 1:51339/1‑143 (MQ=255) aGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATAATATGACATCCTACCATTACGCaacaaagg > 2:674625/1‑137 (MQ=255) tCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGgcgc > 1:1068382/1‑143 (MQ=255) tCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGgcgc > 1:551196/1‑143 (MQ=255) ttCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGTCAGTCTTACATTGCGCAAATGAGGGGCGCACGAAAtt > 1:339119/1‑143 (MQ=255) ttCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAACtt > 1:341355/1‑143 (MQ=255) aTCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCCTACATTGCGCAAAAGAGGCGCGCACGAAATTGCTgggc > 2:142824/1‑143 (MQ=255) tGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCACTAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAACTGGCTgcccgccc > 2:591714/1‑143 (MQ=255) tGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTCCGCACCTGCGGGGCGCACGAAATTGCTGCGCGccc > 1:484631/1‑143 (MQ=255) ggAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAACTTGCTGCGCGCCCa > 1:433578/1‑143 (MQ=255) ggAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCa < 1:909762/143‑1 (MQ=255) aaCTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCagt > 1:869772/1‑143 (MQ=255) aaTCGGTTAGATGGCGATAACTTCACTGGTGCGAAATGTGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCttt < 2:601154/143‑1 (MQ=255) ggTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGGCGTAATCTTTCAAtt > 1:424397/1‑143 (MQ=255) gTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCAGCTGACATCCTTACATTGCGCAAACGAGGGGCGCGCGAAAGTGCTGCGCGCCCAGTAGTAAACATTCAAtat > 2:30805/1‑141 (MQ=255) cgATGGCGATCACTTCACTGGTGCGAAATGCGACCGCAGCAACCGCGCCATTAGCGTAAATAGTACTTATATCGGGCTCTTTCGTCTTGTTGATGAGGGGCGCACGAAATTGATGCGCGCCCATTAGTAATCTTTCAATTTTa < 2:760086/142‑1 (MQ=255) aaCTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCt < 2:711611/143‑1 (MQ=255) ttCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCCAATGGCTttc > 1:397518/1‑143 (MQ=255) ttCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGAGCACGAAATTGCTGCGCGCCCAGGAGTAATCTTTCAATTTTACCAAATGGCTttc > 2:644046/1‑143 (MQ=255) ccgctGCCAAACGCGACCGAAGCAACCGCGCCATTAACGTCAATAGTAATCATATGACATCCTTACATTGCGCCAATGAGCGGCGCACGACATTGCTGCGCGCCCAGCAGTAATCTTTCAATTTTAGCAAATGGCTTtcttct < 2:828708/139‑1 (MQ=255) gTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCa < 1:216724/143‑1 (MQ=255) tGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGCGCGCACGAAATTGCCGCGCGCACAGTAGTAATCATTCAATTTTAGCAAATGGCCGTCTCCTGCAt > 2:407983/1‑143 (MQ=255) cGAACTGTGACCTAAGCAACCGCGCCATTACCGTCAAGAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCAttt < 2:363584/143‑1 (MQ=255) aaaTGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGAGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTc > 1:764899/1‑143 (MQ=255) aTGCGACCGAAGCAACCGCGCCATTACCGTCAAAAGTAGTCATATGACATCCCTACATTGCGCGAATGAGGGGCGCACGAAATTTCGGCGCGCCCCGTCGGAATCTTTCCATTTTATCAAATGGCTGTCCTCTGCCTTTTCGc > 2:813586/1‑143 (MQ=255) aGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTcc > 1:619240/1‑143 (MQ=255) cAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCACTTTTAGCAACTGGCTTTCTTCTGCATTTTCGCTTTTGTGTcccc > 1:638081/1‑143 (MQ=255) aCCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCCCACGCAATTGCTGCGCGCCCAGTAGTAATCTTTCCATTTTACCAAATAGCCTTCTTCTGCATTTTCGCTTTTGTGTcccccc > 2:644884/1‑142 (MQ=255) ccGTGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCCGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCcac < 2:322489/143‑1 (MQ=255) gcCAGTACCGGCAATAGTAAGCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCa < 1:1073545/143‑1 (MQ=255) cctttACCGTACACAGTAATCATATCACATCCTTCCATTGCGCAAATGAGTGGCGCACGAAATTGCTGCGCGACCAGTAGTAATCTTTCAATTTTAGCAAATGTCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAg < 2:920884/140‑1 (MQ=255) cATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCCCagcagc > 1:406866/1‑143 (MQ=255) aTTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCg > 1:842052/1‑143 (MQ=255) ccGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTCTTGTGTCACCCACATCAGCGGaat > 2:976895/1‑143 (MQ=255) aGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGttt < 2:603043/143‑1 (MQ=255) tAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGttttc > 1:81565/1‑142 (MQ=255) tAATCATATGACATCCTTACATTGCGCAAATAAGGAGCGCACGAGATTGCTGCCCGCCCAGGAGTAATCGTTCACTTTTAGCAAATGGCTTGCTTCTGCATGTTGGCTTTTGTGTCCCCCACGTCAGCGTAATGAATGTTTTg > 1:585773/1‑143 (MQ=255) aaTCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCGGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTAAGCACTCTCTCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGa < 1:1020183/143‑1 (MQ=255) aTCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGAt < 1:306994/143‑1 (MQ=255) tCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTCATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATGAGCGGAATGAATGTTTTGATc > 1:320242/1‑143 (MQ=255) tCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATc > 1:161928/1‑143 (MQ=255) tGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACACCCGCGTAATGACTGTTTTGATCAAAcg > 2:707518/1‑142 (MQ=255) | TTTAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACA > NC_000913/1440651‑1440928 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |