Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,479,343 G→T 10.6% R69L (CGA→CTA) ‡ ynbC → hydrolase/methyltransferase domain‑containing protein YnbC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,479,3430GT10.6% 124.2 / 8.5 58R69L (CGA→CTA) ‡ynbChydrolase/methyltransferase domain‑containing protein YnbC
Reads supporting (aligned to +/- strand):  ref base G (25/26);  new base T (2/4);  total (28/30)
Fisher's exact test for biased strand distribution p-value = 6.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-02

ATCGGCACTGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGATCGCGCA  >  NC_000913/1479202‑1479478
                                                                                                                                              |                                                                                                                                       
aTCGGCGCTGGCGCCCGTCACAGCCCGGGTCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGa                                                                                                                                        <  2:465354/143‑1 (MQ=255)
 tCGGCACTGGCCCGCTTTGCAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAGCATTCCGGTCGTCTACACCACCTCCTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAg                                                                                                                                       <  1:613430/143‑1 (MQ=255)
 ccGGCACGGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAg                                                                                                                                       <  1:109557/142‑1 (MQ=255)
  cGGCACTGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATTTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAgg                                                                                                                                      >  2:928958/1‑143 (MQ=255)
         ggCCCGCGTTACGGCCCGGGGCGAAAAAGGTCATCGTCGTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccc                                                                                                                               <  2:973167/143‑4 (MQ=255)
          gCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGCGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccca                                                                                                                              <  1:738030/143‑5 (MQ=255)
          gCCCGCTTTACAGCCCGGGGCGAAAAAGGCCATCGTCTTATGTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCACGTTGATGAACTGGCGATGCCAGATACTGCTCTTTATGCCTGGGATGCCCTCGGGCAtccca                                                                                                                              <  1:500799/143‑5 (MQ=255)
           cccGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTCTATGCCTGGGATGCCCGAGGGCATGGaca                                                                                                                             >  2:548522/1‑141 (MQ=255)
           cccGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGCCTACCACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTCTGCATGGGATGACCAAGGGCATGGaaa                                                                                                                             >  2:851681/1‑143 (MQ=255)
             cGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGaaaaa                                                                                                                           <  2:589039/143‑1 (MQ=255)
                   ccAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCgg                                                                                                                     <  1:1035525/142‑1 (MQ=255)
                         cGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCcgc                                                                                                               >  2:949826/1‑143 (MQ=255)
                             gCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTgg                                                                                                           >  2:227710/1‑143 (MQ=255)
                              cGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGt                                                                                                          <  1:403398/143‑1 (MQ=255)
                                 aaaaGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGCCGATGCCAGATACTGCTTTCTCTGCCTGGGATGCCCGCCGGCATGGCACAAGTTCGGGGCCGCGCgggcat                                                                                                       >  2:48867/1‑139 (MQ=255)
                                 aaaaGGTCATCGTCTTATTTCATAGCCCACATAAACATTCTGGTCGTCTGACAACGCTTGAGCACCACCTGGACATGCTCGATACTGCATTTTAGCCCTGGGATGCCCGAGCGCGTGGAAAAACTTCGCGGCCCCGTGGTtat                                                                                                       >  2:1045221/1‑143 (MQ=255)
                                 aaaaGGTCATCGTCTTATTTAATCGCGGGCATAAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTtat                                                                                                       >  2:556946/1‑143 (MQ=255)
                                    aGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGc                                                                                                    <  1:332704/143‑1 (MQ=255)
                                       tCATCGTCGTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGAGGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCa                                                                                                 <  1:878634/143‑1 (MQ=255)
                                         aTCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccca                                                                                                                              >  2:715295/1‑108 (MQ=255)
                                         aTCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccca                                                                                                                              <  1:715295/112‑5 (MQ=255)
                                                         gcgGGCATGAACATTCTGGTCGTCTATAACGTCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATCCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTg                                                                               <  1:547382/143‑1 (MQ=255)
                                                            ggCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCgg                                                                            <  1:427316/143‑1 (MQ=255)
                                                              cATGAACATTCGGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGa                                                                          <  1:819882/143‑1 (MQ=255)
                                                               aTGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCCGGAt                                                                         >  2:391885/1‑143 (MQ=255)
                                                                 gAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGt                                                                       >  1:895107/1‑143 (MQ=255)
                                                                    ctctCTGGTCGTTTACAGCATCGCGGTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGa                                                                    <  2:291651/140‑1 (MQ=255)
                                                                    cagtcgggTCGTCTACAACATCTGCGTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGAGGCCGGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGa                                                                    <  2:411638/137‑1 (MQ=255)
                                                                      ttCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATg                                                                  <  1:698159/143‑1 (MQ=255)
                                                                      ttCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATg                                                                  <  1:227710/143‑1 (MQ=255)
                                                                            tcgtcTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGCTGTGGATGAATTTg                                                            >  2:969447/1‑143 (MQ=255)
                                                                              gccTACAGCAGCTGGTTGATGAACTGGCGATGCCAGGTACTGCTGTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTc                                                          <  2:233479/141‑1 (MQ=255)
                                                                               tcTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTGTAGCCCATCTCTAGCGCGTTCAGTGCGGGATGGCGCTGAAATTGTcc                                                         >  2:719344/1‑143 (MQ=255)
                                                                                cTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCg                                                        <  1:1073993/143‑1 (MQ=255)
                                                                                cTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGCGCGGGATGTCGATGGATTTGTCCg                                                        >  2:992890/1‑143 (MQ=255)
                                                                                 tACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCTGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGt                                                       >  1:808615/1‑143 (MQ=255)
                                                                                 tACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGt                                                       >  1:939172/1‑143 (MQ=255)
                                                                                        atttggTTGATCAACTGGCGATGCCAGCAACTGCCTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTtgct                                                 <  2:984107/138‑1 (MQ=255)
                                                                                         tctcGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCGATCTCTTGCGCGTTCAGTGCGGGATGTCGAGGAATTTGTCCGTTTtggtg                                                >  1:685133/1‑143 (MQ=255)
                                                                                         tctcGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTtgctg                                                >  2:964224/1‑143 (MQ=255)
                                                                                          ctcGTTGATGAACTGGCGATGCCAGACACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTtgctgc                                               <  1:410454/143‑1 (MQ=255)
                                                                                            cGTTGATGAACCGGCGATGCCAGATACTGCTTCTTATGCCTGGGAGGCCCGCGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCa                                             <  1:912325/143‑1 (MQ=255)
                                                                                             gTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAg                                            >  2:440850/1‑143 (MQ=255)
                                                                                                  tgaACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGAAGAATTTGTCCCTTTTGCTGCCAGCGGCa                                       >  2:666337/1‑143 (MQ=255)
                                                                                                           gATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAGTTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTg                              >  1:380835/1‑143 (MQ=255)
                                                                                                              gCCAGATACTGCTTTTTATGCCTGGGATGCACGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGGGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGGGACAGCCAggacggac                           >  2:882866/1‑143 (MQ=255)
                                                                                                                cAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGTCTg                         >  1:29215/1‑143 (MQ=255)
                                                                                                                 aGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTgg                        <  1:519522/143‑1 (MQ=255)
                                                                                                                       tGCTTTTTATGCATGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCGCGCGCGTTCAGTGCGGGATGTCGATGAATTGGTCCGGTTTGCTGCCAGCGACAGCCAGGTTGGAGTGGAAGAgg                  >  1:583735/1‑143 (MQ=255)
                                                                                                                        gCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGGAGGggt                 >  1:295476/1‑143 (MQ=255)
                                                                                                                         ctgtgtATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAggtg                <  1:427636/138‑1 (MQ=255)
                                                                                                                         cTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAggtg                >  1:699758/1‑143 (MQ=255)
                                                                                                                            tctacgCCGGGGACGCCCGAGCGCATGGAAAAAGGTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTa             <  1:616287/138‑1 (MQ=255)
                                                                                                                               aTGCCTGGGATGCCCGAGGGCAGGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTg          <  2:842469/143‑1 (MQ=255)
                                                                                                                                tGCCGGGGATGCGCGAGAGCATGGAAAAAGTTAGGGGCCGCGTGGGTATAGCCCATCTATTGAGCGGTAAGTGAGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCAACAGGCAGGATGGACAGGAAGAGGTGGGAGtaa         >  2:913416/1‑141 (MQ=255)
                                                                                                                                 gCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGAt        <  2:520826/143‑1 (MQ=255)
                                                                                                                                     tccaTGCCCTCGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTCCAGTGCGCGCCAGCGACAGATTTGTCACAAACCCCGCCACCGACAGCCAGGGTGGACTGGAAGAGGCGGTAGTGCTcgcg    >  2:474169/4‑143 (MQ=255)
                                                                                                                                       gcgtcccGAGGGCATGCAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGGGCGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGATCGCGCa  <  1:429342/139‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                       
ATCGGCACTGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGATCGCGCA  >  NC_000913/1479202‑1479478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: