Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,479,344 | A→C | 12.7% | R69R (CGA→CGC) ‡ | ynbC → | hydrolase/methyltransferase domain‑containing protein YnbC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,479,344 | 0 | A | C | 12.7% | 110.6 / 11.4 | 57 | R69R (CGA→CGC) ‡ | ynbC | hydrolase/methyltransferase domain‑containing protein YnbC |
Reads supporting (aligned to +/- strand): ref base A (25/24); new base C (3/5); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.06e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-02 |
ATCGGCACTGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGATCGCGCA > NC_000913/1479202‑1479478 | aTCGGCGCTGGCGCCCGTCACAGCCCGGGTCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGa < 2:465354/143‑1 (MQ=255) tCGGCACTGGCCCGCTTTGCAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAGCATTCCGGTCGTCT‑ACACCACCTCCTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAg < 1:613430/143‑1 (MQ=255) ccGGCACGGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAg < 1:109557/142‑1 (MQ=255) cGGCACTGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATTTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAgg > 2:928958/1‑143 (MQ=255) ggCCCGCGTTACGGCCCGGGGCGAAAAAGGTCATCGTCGTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccc < 2:973167/143‑4 (MQ=255) gCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGCGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccca < 1:738030/143‑5 (MQ=255) gCCCGCTTTACAGCCCGGGGCGAAAAAGGCCATCGTCTTATGTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCACGTTGATGAACTGGCGATGCCAGATACTGCTCTTTATGCCTGGGATGCCCTCGGGCAtccca < 1:500799/143‑5 (MQ=255) cccGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTCTATGCCTGGGATGCCCGAGGGCATGGaca > 2:548522/1‑141 (MQ=255) cccGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGCCT‑ACCACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTCTGCATGGGATGACCAAGGGCATGGaaa > 2:851681/1‑143 (MQ=255) cGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGaaaaa < 2:589039/143‑1 (MQ=255) ccAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCgg < 1:1035525/142‑1 (MQ=255) cGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCcgc > 2:949826/1‑143 (MQ=255) gCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTgg > 2:227710/1‑143 (MQ=255) cGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGt < 1:403398/143‑1 (MQ=255) aaaaGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGCCGATGCCAGATACTGCTTTCTCTGCCTGGGATGCCCGCCGGCATGGCACAAGTTCGGGGCCGCGCgggcat > 2:48867/1‑139 (MQ=255) aaaaGGTCATCGTCTTATTTCATAGCCCACATAAACATTCTGGTCGTCTGACAAC‑GCTTGAGCACCACCTGGACATGCTCGATACTGCATTTTAGCCCTGGGATGCCCGAGCGCGTGGAAAAACTTCGCGGCCCCGTGGTtat > 2:1045221/1‑143 (MQ=255) aaaaGGTCATCGTCTTATTTAATCGCGGGCATAAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTtat > 2:556946/1‑143 (MQ=255) aGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGc < 1:332704/143‑1 (MQ=255) tCATCGTCGTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGAGGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCa < 1:878634/143‑1 (MQ=255) aTCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccca > 2:715295/1‑108 (MQ=255) aTCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCTCGGGCAtccca < 1:715295/112‑5 (MQ=255) gcgGGCATGAACATTCTGGTCGTCT‑ATAACGTCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATCCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTg < 1:547382/143‑1 (MQ=255) ggCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCgg < 1:427316/143‑1 (MQ=255) cATGAACATTCGGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGa < 1:819882/143‑1 (MQ=255) aTGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCCGGAt > 2:391885/1‑143 (MQ=255) gAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGt > 1:895107/1‑143 (MQ=255) ctctCTGGTCGTTT‑ACAGCATCGCGGTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGa < 2:291651/140‑1 (MQ=255) cagtcgggTCGTCT‑ACAACATCTGCGTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGAGGCCGGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGa < 2:411638/137‑1 (MQ=255) ttCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATg < 1:698159/143‑1 (MQ=255) ttCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATg < 1:227710/143‑1 (MQ=255) tcgtcT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGCTGTGGATGAATTTg > 2:969447/1‑143 (MQ=255) gccT‑ACAGCAGCTGGTTGATGAACTGGCGATGCCAGGTACTGCTGTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTc < 2:233479/141‑1 (MQ=255) tcT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTGTAGCCCATCTCTAGCGCGTTCAGTGCGGGATGGCGCTGAAATTGTcc > 2:719344/1‑143 (MQ=255) cT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCg < 1:1073993/143‑1 (MQ=255) cT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGCGCGGGATGTCGATGGATTTGTCCg > 2:992890/1‑143 (MQ=255) t‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCTGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGt > 1:808615/1‑143 (MQ=255) t‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGt > 1:939172/1‑143 (MQ=255) atttggTTGATCAACTGGCGATGCCAGCAACTGCCTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTtgct < 2:984107/138‑1 (MQ=255) tctcGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCGATCTCTTGCGCGTTCAGTGCGGGATGTCGAGGAATTTGTCCGTTTtggtg > 1:685133/1‑143 (MQ=255) tctcGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTtgctg > 2:964224/1‑143 (MQ=255) ctcGTTGATGAACTGGCGATGCCAGACACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTtgctgc < 1:410454/143‑1 (MQ=255) cGTTGATGAACCGGCGATGCCAGATACTGCTTCTTATGCCTGGGAGGCCCGCGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCa < 1:912325/143‑1 (MQ=255) gTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAg > 2:440850/1‑143 (MQ=255) tgaACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGAAGAATTTGTCCCTTTTGCTGCCAGCGGCa > 2:666337/1‑143 (MQ=255) gATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAGTTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTg > 1:380835/1‑143 (MQ=255) gCCAGATACTGCTTTTTATGCCTGGGATGCACGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGGGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGGGACAGCCAggacggac > 2:882866/1‑143 (MQ=255) cAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGTCTg > 1:29215/1‑143 (MQ=255) aGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTgg < 1:519522/143‑1 (MQ=255) tGCTTTTTATGCATGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCGCGCGCGTTCAGTGCGGGATGTCGATGAATTGGTCCGGTTTGCTGCCAGCGACAGCCAGGTTGGAGTGGAAGAgg > 1:583735/1‑143 (MQ=255) gCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGGAGGggt > 1:295476/1‑143 (MQ=255) ctgtgtATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAggtg < 1:427636/138‑1 (MQ=255) cTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAggtg > 1:699758/1‑143 (MQ=255) tctacgCCGGGGACGCCCGAGCGCATGGAAAAAGGTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTa < 1:616287/138‑1 (MQ=255) aTGCCTGGGATGCCCGAGGGCAGGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTg < 2:842469/143‑1 (MQ=255) tGCCGGGGATGCGCGAGAGCATGGAAAAAGTTAGGGGCCGCGTGGGTATAGCCCATCTATTGAGCGGTAAGTGAGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCAACAGGCAGGATGGACAGGAAGAGGTGGGAGtaa > 2:913416/1‑141 (MQ=255) gCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGAt < 2:520826/143‑1 (MQ=255) tccaTGCCCTCGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTCCAGTGCGCGCCAGCGACAGATTTGTCACAAACCCCGCCACCGACAGCCAGGGTGGACTGGAAGAGGCGGTAGTGCTcgcg > 2:474169/4‑143 (MQ=255) gcgtcccGAGGGCATGCAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGGGCGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGATCGCGCa < 1:429342/139‑1 (MQ=255) | ATCGGCACTGGCCCGCTTTACAGCCCGGGGCGAAAAAGGTCATCGTCTTATTTCATCGCGGGCATGAACATTCTGGTCGTCT‑ACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGTGGTTATAGCCCATCTCTTGCGCGTTCAGTGCGGGATGTCGATGAATTTGTCCGTTTTGCTGCCAGCGACAGCCAGGTTGGACTGGAAGAGGTGGTAGTGATCGCGCA > NC_000913/1479202‑1479478 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |