| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | 100% | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 100.0% | 62.8 / ‑6.7 | 27 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (17/9); minor base G (0/1); total (17/10) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGC > NC_000913/2367967‑2368234 | cacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCCCGATATGGGCTGCCTCGGTGTTGAAGCCCTCCTGGCCGCCGGTTa > 1:795675/1‑143 (MQ=255) acCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATGATGAAAACCGTCGTTTTTGCCTACCACGCTAACGGATGACTCGGTATTGAAGCCAAGCTGGCCGCCGGTTAc > 2:635801/1‑143 (MQ=255) ttCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGCCGCCCTGCTGCCCGCCGGTTACGAAACTAGCGCCATTTTTACCCAAACTGaaa > 1:317885/1‑141 (MQ=255) ctgCAAGTTATCTGTCCATCCAGCAAGGAAAATGAATAATGAAATCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAAt < 2:901741/141‑1 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAAGTAGCGCCATTTTGACCCAGACCGAtcgtc > 2:1010737/1‑139 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGCCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGCTAATc > 2:440179/1‑143 (MQ=255) cGTGCATCCAGCAAGGAAAATGAATAACGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 1:635801/143‑1 (MQ=255) gCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGAGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCAATTTATg > 1:527532/1‑143 (MQ=255) aaaTGAATAATGATATCCGTCTTTTTTGCTTACCACGCTATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCTTACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 2:790026/143‑1 (MQ=255) aaTGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTg < 2:854435/143‑1 (MQ=255) ataatGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGccct > 2:100222/1‑140 (MQ=255) tGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTCCGCAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCACTATATGGTTCGGTGGCTAGTCTg > 1:1068406/1‑143 (MQ=255) gAAAACCGTCGTTTTTGCCTTCCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGAGAAACCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTgg < 1:721642/143‑1 (MQ=255) gAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTTATGCCCTGCTGGCCGCCGGTTACGTTATTTTCGCTATTTTTACCCATACTGAGAAACCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTgg < 1:13056/143‑1 (MQ=255) aaCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAACCTTTTATGGATCAGAGGCACGTCTgacgg > 2:265491/1‑143 (MQ=255) aaCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCATGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACGCCTACTGATAATACCGGTGAAAAAGCCTTTTATGGTCAGGTGGCTACTCTagcgg > 2:910427/1‑143 (MQ=255) tttttGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGAAAaga > 1:633673/1‑143 (MQ=255) tACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTGTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAAAGGCATTcc > 1:958378/1‑143 (MQ=255) cACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGATGGCTGGTCAGGAGGCGGGAGGAGGCATTGCggc > 2:487866/1‑142 (MQ=255) gATCTGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCTCTGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTa < 1:130674/143‑1 (MQ=255) tGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACGCATACTGATACTCCCGGTGACAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGCAAGACGCATTCCCGCTTATgcg > 2:1072783/1‑143 (MQ=255) gggATGCCCCGGTATTGAAGCTCTGCTGGCCGCCGGTTACGAAAGTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATgcgc < 2:795675/143‑1 (MQ=255) ggATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTTTGGTTCGGTGGCTCGTTTGGCGGCAGAAAGAGGCATTCCGGTTTATGCGcc > 1:603631/1‑143 (MQ=255) aggCCTCGGGAGTGAGGCCGCGCTGGCGTCCGGTTAGGTAATTAGCGCCACTTTTACCCATACTGAGAAGCGCGGTGAAAAAGCCTTTTATGTGTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCgg < 2:72204/141‑1 (MQ=255) tCGGTATTGCAGCCCTGCGGGCCGCCGGTTACGAACTTAGCGCCATTTTTATCCTTTCTGTTTTTTTTTTTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAAc < 1:163652/143‑1 (MQ=255) tCGATATGGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTGTATGCGCCGGATAAc > 2:714262/1‑143 (MQ=255) ccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGCAAGAGGCATTCCGGTTTATGCGCCGGCTAACGTTCCTCCTCCGc > 2:530051/1‑143 (MQ=255) | CACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGC > NC_000913/2367967‑2368234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |