| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,473,615 | C→T | 100% | W156* (TGG→TAG) | rpsG ← | 30S ribosomal subunit protein S7 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,473,615 | 0 | C | T | 100.0% | 167.2 / ‑6.7 | 56 | W156* (TGG→TAG) | rpsG | 30S ribosomal subunit protein S7 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (26/29); minor base G (0/1); total (26/30) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACCGC > NC_000913/3473476‑3473750 | gATGTTACGTTAGCGTGGTATGGGTGTTGTACGAGTCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGAtaactaac < 2:461792/143‑1 (MQ=255) aTGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACg < 1:477081/143‑1 (MQ=255) gTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGt > 2:697203/1‑143 (MQ=255) ttACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACggga > 2:599470/1‑141 (MQ=255) aCGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAgt < 2:545841/143‑1 (MQ=255) gTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGATTATCTTTTAGGCGTTCAATGTAAGTAGCCCAAAGCGGGCCGCTTACTGGAAGTGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGtgtg > 2:704214/1‑143 (MQ=255) gCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGa < 1:343928/143‑1 (MQ=255) gTGCGATGTGTGTTGTACGGGCCTTTTGTTTCCTCGTCTATCTTTTCGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCTGATGGGATATCTAACGGTAGTGTGCGAAc < 2:824929/143‑1 (MQ=255) tGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACg > 2:424227/1‑143 (MQ=255) gATGGGTGTTGTACGAGCCATATAATTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAACCAGCCTGCCTACTGGAAGCGCCCGCCCGGCGACTAAAACTCCGAAGGGACAACTCACGGCAGTGTGCGAACGCCt > 2:104861/1‑143 (MQ=255) tgcgtgtTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCttg < 2:476094/140‑1 (MQ=255) tGGGTGTTGTGCGAGCCATTTGTTGCCGCGTTTATCTTTTATGCGTTCAATTTAAGCAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCttg < 2:825971/143‑1 (MQ=255) tGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCttg > 2:722623/1‑143 (MQ=255) tgtgtTGTACGTGCCATTTGTTGCCTCGTGTATCTTTTAGGCGTTCAATTTAAGTCGCCCAAAGCGGGCGGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCttgtt < 2:453458/142‑1 (MQ=255) ggTGTTGTACGAGCCATTTGTTTCTTCGTGTATCTTTTAGGCGTTCAATTTACGCAGCCCTATGCGGGCTGCGTACTGGGAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCttgtt < 2:373332/143‑1 (MQ=255) ggTGTGGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTTGGTGGTCCAAAACCAGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCttgtt < 1:780829/143‑1 (MQ=255) tgttgtACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTgg < 2:322138/143‑1 (MQ=255) gttgtACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGc < 2:149061/143‑1 (MQ=255) cGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGc > 1:425200/1‑143 (MQ=255) gCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAAGTGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCAt > 2:499660/1‑143 (MQ=255) tttCCTCGTTTATCTTTTAGGCGTTCAATGTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGaa < 1:1029011/143‑1 (MQ=255) tCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCGTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACACCTTGTTGGCTTCGGCCCTACGGTGAACGTCt > 2:241634/1‑143 (MQ=255) tCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCt > 2:342431/1‑143 (MQ=255) tttATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGGCATACGGTGAAGGGCTTCa > 1:165846/1‑143 (MQ=255) tCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGtt < 1:1049703/143‑1 (MQ=255) gcggcgtggCGTGCAACCTAAGTAGCCCAAAGCGGTCTGCTGACTGGATGCTCCCGCCTGGTGACTAAAACTCGGTAGGGAGAACTAACGGTAGTGGTCGAACGCCTTGTTGGCTTCGGCCAGACGGTGAACGTCTTCACGtt < 2:748237/136‑1 (MQ=255) cTTTTAGGCGGTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAATCTCCGAAGGGATAACTAACGGTGGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGttt < 2:322172/143‑1 (MQ=255) tttAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTAGTCACCAGATCTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCt < 1:781794/143‑1 (MQ=255) tttAGGCGTTCAATTTAAGCAGCCCGAAGCCGGCTGCTTACAGCAAAAGACTTGCTTTTGTCTCACATGCTGCAGTCATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCt < 2:758975/143‑1 (MQ=255) gCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTATGCACGTTTCTTAAcg > 2:451962/1‑142 (MQ=255) ttCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCa < 1:971203/143‑1 (MQ=255) aaTTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCCCGTCTCTTAACTGCAGTa > 2:815181/1‑143 (MQ=255) aaGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACGCCGAAGGGATAACTAACGGTAATGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTAACGTTTCTTAACTACCGTACCttt > 2:155349/1‑143 (MQ=255) cccAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCAATACGGTGAACGTCTTCACGGTTCTTAACTGCAGTACCTTTGTTTTc > 2:421861/1‑143 (MQ=255) aaGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgca < 1:1044223/143‑1 (MQ=255) cgCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgcag < 1:695926/142‑1 (MQ=255) gCGGGCTGCTTACCGGAAGCGCCCGCCTGGTGACTAAAGCTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgcagc < 1:973891/143‑1 (MQ=255) ctgctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTCACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTACCTGCAGTACCTTTGTTTTATGCAGCATCAg > 2:701362/1‑143 (MQ=255) ctgctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAg > 1:910001/1‑143 (MQ=255) ctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGaaa < 1:722623/143‑1 (MQ=255) tACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTACGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAgt > 1:559473/1‑143 (MQ=255) cgcccgccTGGTGACTAAAACGCCGAAGGGACAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGATCGTCCTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGcc < 1:129036/143‑1 (MQ=255) cccgccTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCCGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCac > 1:804028/1‑142 (MQ=255) ccgccTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCggg > 1:103520/1‑143 (MQ=255) ccgccTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTCCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAACGCTCGCTCGCCAgg > 2:501596/1‑143 (MQ=255) ccgccTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCAATACGGTGAACGTCTTCACGTGTCTTAACTGCAGTACCTTTGTTTTATGCAGAATCGTAACGTCCGTACGCCAgg > 1:922933/1‑143 (MQ=255) cgccTGGTGACTAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTCTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTATCCTGCAGCATCAGAAAGTTCGTCAGCCAGgc > 2:995256/1‑143 (MQ=255) ccTGGTGACTAAAACCCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGgcgc < 1:957765/143‑1 (MQ=255) cTGGCGACTAAAGCTCCGGTGGGATAACTAACGGTAGTTTGCGCGCGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACCGCAGTTCCTTTCTTTTCTGCAGCATCTGTGCTTTCTTTCGCCAGGCGCa < 2:430914/143‑1 (MQ=255) gACTAAATCTCGGAAGGGATAACTAACGGTAGTGTGCGTACGCCTTGTTGGCTGCGGCCATACGGTGAACGTCGTCACGTCTATTATCTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGcc < 2:376581/143‑1 (MQ=255) tAAAACTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGACGCAGAGCCATg > 1:799976/1‑143 (MQ=255) aaaaCTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATgg > 2:948163/1‑143 (MQ=255) aatcTCCGATGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCGGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGa < 2:86282/140‑1 (MQ=255) aaaCTCCGAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGa < 2:412200/143‑1 (MQ=255) cgcaggggATACCGAACGGTAGGGTGCGAACGCCTTGGTGGCTTGGGCCATACGGTGAACGTCGTCACGTTTCTTAACTGCAGTACCTTTGTTTTTTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTAt < 1:1025610/138‑1 (MQ=255) gAAGGGATAACTAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCa > 1:869478/1‑143 (MQ=255) ggATAACTAACGGTAGTGTGCGACCGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACcgc < 2:1068592/143‑1 (MQ=255) | GATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACCGC > NC_000913/3473476‑3473750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |