Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,184,543 | 0 | C | A | 98.4% | 121.6 / ‑6.0 | 48 | P1100Q (CCG→CAG) | rpoB | RNA polymerase subunit beta |
Reads supporting (aligned to +/- strand): ref base C (0/1); major base A (18/27); minor base G (0/1); total (18/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC > NC_000913/4184407‑4184679 | gCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTggg < 1:263838/143‑1 (MQ=255) ccGGTTAAACGGCATATCCAACCTGGTGACTAGATGGCAGGACGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGCTATGCCTCACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTggg < 2:310919/142‑1 (MQ=255) agtcaaaaCGCCGGATCCAGCCCGGTGACAAGACGGGAGGTCGTCACGGTAACAAGGGTGTAAGTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGc < 1:28956/138‑1 (MQ=255) ccGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGGTAGGCCTTACGATGAAAAGGGTACTCCTGCAGACATCGTACAGGACCAACGGGGCGGACCggcgc > 1:776159/1‑139 (MQ=255) cAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa > 2:581359/1‑143 (MQ=255) cAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAAAGGGACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa > 2:927527/1‑143 (MQ=255) aGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTACGTTCTAAGATCAACCCGATCGAAGACAGGCCTAACGATGAAAACGGTCCGCGGATAGACAACGAAATGAACCAGACGGGCGTGCCGACACGTATGAAc > 2:954123/1‑143 (MQ=255) aGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGCTCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGACTCGTATGAAc > 2:827897/1‑143 (MQ=255) aGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTAGGAAc > 1:772288/1‑143 (MQ=255) tGGTGACAAGATGGCAGGGCGTCACGGTCACAAGGGTGTAATTGCTAACATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCg < 1:380651/143‑1 (MQ=255) cggTGACAACATGGCAGGTCGCCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGACAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCg < 1:151144/142‑1 (MQ=255) aTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCt > 1:529854/1‑143 (MQ=255) cAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaa < 1:509279/143‑1 (MQ=255) aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa < 1:91782/143‑1 (MQ=255) gcggtcACGGTAGCAAGGGTGGAATTTCTAAGATCGACGCGATCGAAGATAGGCCTTACGATGAAAGCGGTACGCCGGTAGACATCGTACTGGACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAAcc < 2:983444/140‑1 (MQ=255) aCGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCATTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCACGTATGAACATCGGTCAGAAGCTCGAAACCCAccgg > 2:133438/1‑141 (MQ=255) ggTAACAAGGGTGTAAATTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTggg < 1:152650/143‑1 (MQ=255) tAACAAGGGTGTAATTTCCACGACCAACCCGATCGAACATATACCGTAGGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTa < 1:88834/143‑1 (MQ=255) cAAGGGTGGCATTTCTGAGATCGGCCCTATCGATGATATGTCTTANGATGAAAGCGGTACGCCGGTAGACATCGTNCTGAACCAGCTGGGGGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATgg < 2:724744/143‑1 (MQ=255) tgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGGGa > 1:717915/1‑143 (MQ=255) tgcaaTTTCGAAGATCACCCCGATCGAAGATATGCCTCACGATGGACACGGTAGGCCTGTAGACATCGTACTGCACCAGCTGGGCGTACCGTCTCGTAAGAACATCGGTCACGGCCTCGAAACCCACCTGGGGATGGCTGCGa < 1:250801/140‑1 (MQ=255) tAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGCACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCGTCGAAACCGCCCTGGGTATAGATGCGaaa > 2:48309/1‑143 (MQ=255) aaTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACGAGCTGGGCGTACAGTCCCGTATGAACATCGGTCAGATCCTCGAAACACACATGGGTATGGCTGCGAAAg > 1:290455/1‑143 (MQ=255) aaTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAg < 1:1046209/143‑1 (MQ=255) aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCgg > 2:65524/1‑143 (MQ=255) aTCAACCTGATTGAAGATATGTCTTACGATGAAAACGGTACGCCGGTAGACAGCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGa < 1:331766/143‑1 (MQ=255) aaCTCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGTTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACaa < 2:577990/143‑1 (MQ=255) aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACaa < 2:1006155/143‑1 (MQ=255) accGATCAAAGATAGGCCTTACGAGGAAGACGGTACGCCGGTAGACATCGTACTGCAGCGGCTGGGCGTACCGTCTCGTATGAACAGCGGTCAGGTCCTCGAAACCCACCTGCGTATGGCTGCGAAGGGTATCGGCGACAAGa < 2:524013/142‑1 (MQ=255) tCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAAc < 1:123828/143‑1 (MQ=255) tCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACAGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAAc < 1:649680/143‑1 (MQ=255) gagacgCCTTACGAGGAAAACGGGACGCCGGTAGACGTCGTACTGAACCAGCTGAGCGTACCGTCTCGTATGAACATCGGTCAGAGCCTCGAAACCCTCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCAt < 1:58069/138‑1 (MQ=255) gATATGCCTTAAGATGAGAACGGTACGCCGGTAGACATAGGACGGAGGCAGGCGGGCGTACCGTCGCGTATGAACATCGGTCAGAGCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCAt < 1:129276/143‑1 (MQ=255) gCCTTACGATGAAAACGGTACGCCGGTAGACCTCGTACTGACCCAGCTGGACGTACCGTCTCGTATGAAAATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGa > 1:179736/1‑143 (MQ=255) cTTACGATGAAAACGGTACGCCAGTAGACATCGTACTGAGCCAGCTGGGCGTTCCGACCCACATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa < 1:491831/143‑1 (MQ=255) gATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCAAAAAGAACAACGGCATGCTGAAAcagca > 2:941517/1‑143 (MQ=255) aTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGGCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTGTGGCTGCGAGAGGTATCGGCGACAAGAGCAACGCCATGCTGAAGccgcag > 2:969915/1‑143 (MQ=255) tGAAAACGGCACGCCCGTAGACATCGTACTTAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGACCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACagcagc < 1:318705/143‑1 (MQ=255) gAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCCTGCTGAAACAgcagca > 2:898577/1‑143 (MQ=255) gAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCGGGGTATGGCGGCGAAAGGTATCGGCGACAAGATCCACGCCATGCTGAAAAAgcagca > 2:270968/1‑143 (MQ=255) tatgcgggTAGACAGCGTACTGGGCGAGCTGGGCGTACCGTCTGGTATGAACATCGGTCAGATCCGCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTcg < 2:768082/137‑1 (MQ=255) aCGTCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCGCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTcgc < 2:783888/143‑1 (MQ=255) cGGTCGACATCGTACTGAACCCGCTGCGCGTACCGTCTCGCATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGaaa < 1:207180/143‑1 (MQ=255) gTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACt < 1:65524/143‑1 (MQ=255) aCATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAGCGCCGTGCTGAAACCGCGGCAAGAAGTCGCCAAAATgcga > 1:264200/1‑142 (MQ=255) tacctaaCCTGCTGCTCTTACTGTTTCGTATCAACATCGGTCAGATCCTCGAAACCCACCTTGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCATTGCTGATACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTc < 2:935420/138‑1 (MQ=255) aCTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCa < 1:688567/143‑1 (MQ=255) tGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATc < 2:106723/143‑1 (MQ=255) | GCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC > NC_000913/4184407‑4184679 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |