| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,196,230 | C→T | 14.3% | intergenic (‑131/+102) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,196,230 | 0 | C | T | 14.3% | 148.9 / 14.8 | 70 | intergenic (‑131/+102) | thiC/rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
| Reads supporting (aligned to +/- strand): ref base C (32/28); new base T (6/4); total (38/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 | |||||||||||
TGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACCAGC > NC_000913/4196088‑4196371 | tgttgCGGACATAGCTCATTCGAGAAAGTTATGGACGGGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCcgc < 2:863356/143‑1 (MQ=255) ttgCAGACATAGCTCATTCCAAAAAGGTAAGGACGTGGCTGGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGACTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGGTCCGCgg > 2:318195/1‑143 (MQ=255) tgCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGa > 1:986932/1‑143 (MQ=255) gCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGAt > 1:289240/1‑143 (MQ=255) aGACATAGCTGATTCCAAAAAGTTAAGGCCGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATcc < 1:879800/143‑1 (MQ=255) aGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGGTCAGGTTCCGCGGATcc > 1:95904/1‑143 (MQ=255) aGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATcc > 1:1053971/1‑143 (MQ=255) cATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGa < 1:989674/143‑1 (MQ=255) cTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACACTTGTTGTGTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATaaa > 1:668594/1‑143 (MQ=255) tCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAAc > 2:980626/1‑143 (MQ=255) gccAAAACGTTAAGGCCGTGGCTTGTCAGACGACGGATGACGCAAGAGCCGATCGCCGCAGGGGCGATGCGATAGCAGACTAACTCTTGTTCCCTTCGCGGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGtc < 2:968275/142‑1 (MQ=255) ccAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGtct < 1:94946/143‑1 (MQ=255) cAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGCATAAACGGgctc > 2:805874/1‑143 (MQ=255) cAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGtctc > 1:862865/1‑143 (MQ=255) aaaaaGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGACTAAACGGTCTCa > 1:651612/1‑143 (MQ=255) aaaaaGTGAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGGTGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCa < 2:208877/143‑1 (MQ=255) gagctAAGGACCTGGCTTGTCAGACGACGGATGAAGCAAGAGTCGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGcc < 2:812188/139‑1 (MQ=255) atgACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTaa < 2:621095/141‑1 (MQ=255) gtgtCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTATTTTTTGTTTTTTTTTCAGGTATTAGCCTGATCAGGTGCCGCGGAGCCCGAATAAACGGTCTCAGCCAGTTAAGGCAc < 1:48870/143‑1 (MQ=255) gTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAACCGGTCTCCGCCAGTTCACGCAc > 1:209134/1‑143 (MQ=255) gTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGACGCGATAGCAGATTAACACTTGTTCCCTTCGCAGGGATTAGCCTGATCACGTTCCGCGGATCCCGCATACACAGTCTCAGCCAGTTACGGCAc > 2:199713/1‑143 (MQ=255) gCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTcc > 1:571411/1‑143 (MQ=255) gTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACa < 1:166533/143‑1 (MQ=255) gacgacGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTACGACAATCCGACAAGaa > 1:860455/1‑143 (MQ=255) acgacgGATGAAGCAAGAGCCGTTCGCCGCAGGGGCGATGCGATAGCAGATTACCTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGaaa < 2:683522/143‑1 (MQ=255) cgacgGATGAAGCAAGGGAGGATCGCGGCAGGGGGGATGCGATAGCAGATTAACGCTTGGTCCCTTCGCAGGGATTAGCCTGATCAGGTGCCGCGGATCCCGAAGAAACGGTCGCAGCCAGTTAAGGCACTCCGACAAGAAAt < 1:810344/143‑1 (MQ=255) gacgGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTGCGCGGATCCCGAATAAACGGTCTCAGCCGGGTAAGGCACTCCGGCAAGAAAtt > 1:208139/1‑143 (MQ=255) gacgGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGAATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGaaact > 2:423068/1‑141 (MQ=255) gacgGATGAAGCAAGAGACGATCGCCGCAGGGGAGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCACGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTCAGGCACCCCGACAAGaaaat > 2:145373/1‑141 (MQ=255) gATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGGATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAAGCACTCCGACAAGAAATTAGcc > 2:191428/1‑143 (MQ=255) aTGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGccc > 2:421940/1‑143 (MQ=255) cAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCcaa > 1:188892/1‑143 (MQ=255) cAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCaaa > 2:150790/1‑143 (MQ=255) cAACAGACGATCGCCGCAGGGGCGAGGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCAAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCaaa < 2:49643/143‑1 (MQ=255) aaGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAAt < 2:606425/143‑1 (MQ=255) agagACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACGCCGACAAGAAATTAGACCCGCAAATg > 2:312267/1‑143 (MQ=255) aTCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCAtt > 2:666645/1‑143 (MQ=255) aTCGCCGCAGGGGCGAGGCGATAGCACATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCATGTTCCGCGGATCCCGAATAACCGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCAtt < 1:430006/143‑1 (MQ=255) cgcAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATg > 1:617131/1‑143 (MQ=255) aGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTaa < 1:980626/143‑1 (MQ=255) cgatgcgatAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTAc < 2:542660/143‑1 (MQ=255) gatgcgatAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGAACCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAAATACCCCCGCAAAGAGGGCATTGAACGTTAATTAcg > 2:309381/1‑143 (MQ=255) atgcgagAGCAGATTATCTCTTGTTCCCTTCGCAGGTAATAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTAcgc < 1:884619/143‑1 (MQ=255) cgatAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAACCGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAGAAGGGGCATTGAATGTACATTCCGCGtt > 1:839635/1‑143 (MQ=255) gatAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTa < 1:122901/143‑1 (MQ=255) cAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGCATAAACGGTCTCAGCCAGTTAAGGCACTCCGCCAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAACTTACGCGTCAACAgc > 2:822198/1‑143 (MQ=255) aGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAgcg < 1:151749/143‑1 (MQ=255) gATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAgcgc > 2:733649/1‑143 (MQ=255) gATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGAGGCATAGAAGCTAAATTACGCGTTAACAacgc > 2:258732/1‑143 (MQ=255) aTTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGACAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCAAAGAAAGTAAATTACGCGTGAACAGCGCa > 1:392752/1‑143 (MQ=255) aCTCTTGTTCCCTTCGGAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACGCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAAc < 1:860811/143‑1 (MQ=255) tctTGTTCCCTTCGCAGGTATTATCCTGATAAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTc < 1:655280/143‑1 (MQ=255) ctTGTGACCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCa < 2:95904/143‑1 (MQ=255) ttGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTACATTACGCGTAAACAGCGCAGAGCTCaa > 2:545876/1‑143 (MQ=255) ttGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCaa > 1:273326/1‑143 (MQ=255) ttGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCaa > 2:401118/1‑143 (MQ=255) ttGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGGTAACAGCGCAGAACTCaa > 1:317677/1‑143 (MQ=255) tGTTCCCTTCGCAGGTATTAGCCCGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAg < 2:655904/143‑1 (MQ=255) ttCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGCTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCa < 1:538254/143‑1 (MQ=255) ccTTCGCAGGTATTAGCCTGATCAGGTTCCGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTGAACAGCGCAGAACTCAAGCAGGa > 1:428303/1‑143 (MQ=255) cGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGtt < 1:583109/143‑1 (MQ=255) gCAGGTATTAGCCTGATCATGTTCCGCGGTTCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGttt < 2:597208/143‑1 (MQ=255) aGGTATTAGCCTGATCAGGTACCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGa < 1:225107/143‑1 (MQ=255) gatgaGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCGGAACTCAAGCAGGATGTTTGAcgc < 1:865082/139‑1 (MQ=255) ccgcaTCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCACGTAAGGCACTCCGACAAGAAATTAGCCCCGCAAACGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACgcgggcgg < 2:208139/139‑1 (MQ=255) ccTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACgcgggcgg < 1:423068/143‑1 (MQ=255) tggtCAGGGTCCGCGGATCCCGAGTAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATGAGCCCCGCAAATGGGGCATTGAATGTAAAGTACGCGTGAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGgcggcg < 2:659713/140‑1 (MQ=255) gcccAGGTCCCGCGCATCCAGAATAAACGGTCTCAGCCAGTCAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGt < 2:571411/140‑1 (MQ=255) ttCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAAATACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCAc > 1:727101/1‑143 (MQ=255) ccGTGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACca > 2:787895/1‑143 (MQ=255) ccGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACca > 1:914550/1‑143 (MQ=255) cgcgGATCCCGAATACACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGCTTGACGCCGCCCGCGTCaaacatcct < 2:40038/143‑8 (MQ=255) cgcgGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTCACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACcag > 2:331321/1‑143 (MQ=255) cgcgGATCACGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGACCTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACcag > 1:383163/1‑143 (MQ=255) gcgGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGCACTCCAGCAGGATGTTTGACCCGGGCTGCTTAAATCACcaga > 1:132173/1‑142 (MQ=255) gcgGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACcagc > 1:872819/1‑143 (MQ=255) gcgGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGATAACAGCGCAGCACTCACGCAGGATGTTTGACGCGGGCGGCGTCAAGCACcagc > 1:215663/1‑143 (MQ=255) | TGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAGCCTGATCAGGTTCCGCGGATCCCGAATAAACGGTCTCAGCCAGTTAAGGCACTCCGACAAGAAATTAGCCCCGCAAATGGGGCATTGAATGTAAATTACGCGTTAACAGCGCAGAACTCAAGCAGGATGTTTGACGCGGGCGGCGTCAAGCACCAGC > NC_000913/4196088‑4196371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |