breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 572411846 (15.570)14 (0.270) 8/250 NT 2.1% coding (44/102 nt) ylcH DLP12 prophage; uncharacterized protein YlcH
?NC_000913 = 572431 521 (10.130)coding (64/102 nt) ylcH DLP12 prophage; uncharacterized protein YlcH
* ? NC_000913 = 5719622352 (43.290)6 (0.110) 3/254 NT 0.26% coding (509/798 nt) ybcM DLP12 prophage; putative DNA‑binding transcriptional regulator
?NC_000913 = 572000 2391 (45.750)coding (547/798 nt) ybcM DLP12 prophage; putative DNA‑binding transcriptional regulator
* ? NC_000913 570695 =2141 (39.410)36 (0.700) 15/250 NT 1.8% intergenic (+267/‑198) ybcK/ybcL DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
?NC_000913 570719 = 1887 (36.690)intergenic (+291/‑174) ybcK/ybcL DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
* ? NC_000913 570627 =2631 (48.420)8 (0.160) 5/238 NT 0.35% intergenic (+199/‑266) ybcK/ybcL DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
?NC_000913 570677 = 2141 (43.750)intergenic (+249/‑216) ybcK/ybcL DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
* ? NC_000913 568282 =2112 (38.870)6 (0.110) 4/254 NT 0.30% intergenic (+35/‑33) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
?NC_000913 568310 = 2012 (38.500)intergenic (+63/‑5) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
* ? NC_000913 568103 =2021 (37.200)13 (0.250) 9/252 NT 0.69% pseudogene (69/213 nt) renD DLP12 prophage; protein RenD
?NC_000913 568127 = 1824 (35.180)pseudogene (93/213 nt) renD DLP12 prophage; protein RenD