| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 95.0% | 70.4 / 0.8 | 21 | pseudogene (918/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (7/12); minor base A (1/0); total (8/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 95.0% | 70.3 / 1.0 | 21 | pseudogene (917/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (7/12); minor base A (1/0); total (8/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-01 | |||||||||||
GGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATG > NC_000913/2173236‑2173478 || ggCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGTAATTAAAATGTTGATTGGGATAAAAATCAGGCTTGCCGATaccaccgc < 1:604859/129‑3 (MQ=255) gCCATCGCAACGGAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATGAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGt < 2:290521/129‑1 (MQ=255) cATCGCCACGAAGGAGCAGATGGTTGCAAGACCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTcc < 2:429209/129‑1 (MQ=255) aCGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAATATGGTGTGTGGGATAAAAATCAGGCTTGCAGATACCA‑‑CCGCCGTATGTCCCagcagc < 1:662127/129‑1 (MQ=255) aagaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGCTTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAAc > 2:418190/1‑129 (MQ=255) tagCCCATTGTAGCACGATCGCCAAACGTCACCATCTGCTTGCCCGGCACACAACCAGCAATTAAAAGGGTGAGGGAGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGcc < 2:8631/128‑1 (MQ=255) agCCGATGGTGGCAAGATCGCCAACCGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAATATTTTTTTTTTTCTATATCA‑‑CCGACGTATGTCCCAGCAGCAACGCCg < 1:154990/129‑1 (MQ=255) gCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTTGGATAAATTTTATTTTTGCTGTTAC‑‑TTTCGCCGTATGTCCCAGCAGCAACGCCgg < 1:130951/129‑1 (MQ=255) aTGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTCTGTCCCAGCAGCAACGCCGGACCa > 2:524577/1‑129 (MQ=255) tggtggCAAGATCGCCAATCTGCAGCCCCTGATTAACCGAAAAAAAAACAACAATAAAAAAAGAAAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CAGCCATATGTCCCAGCAGCAACGCCGGATaaa > 1:201940/1‑129 (MQ=255) gtggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAgg > 2:483550/1‑129 (MQ=255) aCGGCCGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGTCGATATCA‑‑CTGCCGTATGTCCCAGTAGTATCGCGGGATCAAGGCGGATCAGGAACTCCt < 1:465669/129‑1 (MQ=255) gcagcaCCTGATTACCGGGCACACAAACAGCAATTAAAATGGCGAGTGGAAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAc < 2:252538/129‑1 (MQ=255) cTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑TTGCCGTATGTTTCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGaa < 1:368920/129‑1 (MQ=255) aaTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGC‑‑AAAAAAAACAAACATATAACAAAGCAGCAACGCCGAATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCACCTGTAAAAGACTACGAGc > 1:483619/1‑129 (MQ=255) aaaTGGTGAGTGGGATAATAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCt < 2:293799/129‑1 (MQ=255) agtGGTGAGTGTGAGAACGATCAGGGTCGGCGGTACCA‑‑CCGGCGTATGGCCCAGCAGCAACGCCGGATCAAGGCCACTCAGGATCTCCTGACCGCCGAACTGCGCCTGTAAACGACTCCGAGCCTGCtt < 2:146878/127‑1 (MQ=255) tgatttggATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAATTCCTGATCAATTCCAATCATGATCTCCTGACCTCCGAACTTCGCCAGTAAACGACTACGAGCCTGCTTAGCGa < 1:626468/123‑1 (MQ=255) gAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCACCGTATGTCCAAGCAACAACGCCAGAACAAGGCCAATCAGGAACTGGTGACCGCCAAACATCCCCACTAGACGACTACGAGCCTGCTTAGCGAt > 1:122869/1‑129 (MQ=255) gTGGGATAAAAATCATGCTTGCCGATACCA‑‑CCACCGTAAGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg > 1:491626/1‑129 (MQ=255) ggATAAAAATCAGGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGAAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACCTACCCTGTAAACGACTACGAGCCTGCTGAGCGAtacgcg > 2:628511/1‑124 (MQ=255) cTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCTGCCACGCCAGATCAATGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAATCGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg < 1:418190/129‑1 (MQ=255) || GGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATG > NC_000913/2173236‑2173478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |