| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 96.4% | 67.9 / NA | 29 | pseudogene (151/758 nt) | glpR | DNA‑binding transcriptional repressor GlpR |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (10/17); minor base A (1/0); total (11/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGT > NC_000913/3560331‑3560570 | gCCATTGGGGATTTGCTCCGCCACTTTGCGAGCGATACACAAATAAAATTAGATCTGGATGACCTTGAGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGcgcag > 1:207530/1‑125 (MQ=255)gCCATTGGGGATTCGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTTTTTTTTGTTCTGGAAGGCAGCGCCGCACCGCCATGA‑TGGcgcag < 1:15430/129‑5 (MQ=255) tGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGACGTGTTAACCGCACTGGAAGGCAGCGCTGCACCGCCATGA‑TGGCGCCGGATCa > 2:121043/1‑129 (MQ=255) gggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAgg < 1:509717/129‑1 (MQ=255) ggtCCGCCAGTTGGCGGGCGATGCGCTCTTTTTCTTCGGTCTCGATGTCGTTGCGATCGTGCTACGGTTTGTTAATCGAACTTGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCt < 1:40295/127‑1 (MQ=255) ccGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGATCTAGATGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCg > 1:487703/1‑129 (MQ=255) ccGCCACTTTGCGGGCGATGCGCTCTATTACATCAAACAAAGAGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCg > 1:138952/1‑129 (MQ=255) cGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGATAAAGGTGACCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGc > 1:282538/1‑129 (MQ=255) tGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGTCGCATTGTTATGATTGTG‑TAGGATCAGGTTTTGCTCCGCCAGCGCAt < 1:273882/129‑1 (MQ=255) ggCGATGCGCTCTTTTTCTTCGGTCTGGGTGGACTAAAAAACGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAg > 1:296317/1‑129 (MQ=255) tgATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTATCCGAACTGGAAGGCAGCGCCGTACCGTTATGA‑TGGCGTAGGATCAGGTTTGGCTCCGCCAGCTCATTGAGGt < 1:29342/128‑1 (MQ=255) atccgcTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcg < 2:506794/126‑1 (MQ=255) aTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGTACCGCTATGA‑TGGCGTAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcg < 1:541246/129‑1 (MQ=255) tGCGCTCTTTTTCTTCGGTCCGGGTGGCCTTGCGAACGTGCCACAGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcgc > 1:506794/1‑129 (MQ=255) cgcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTTGAAGTCATTGTCTCACCGCCATTA‑TTGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcgg < 1:251143/129‑1 (MQ=255) gcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCATGACACAAAGAAATAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggc > 1:248394/1‑129 (MQ=255) ttttCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTAGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGACAGCTCATTGAGGTCGCGGCGAATa > 2:289324/1‑129 (MQ=255) ttttCTTCGGTCTGGGTGGCCTTGCGAGAGTGCCACGGCGTGTTCACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCCGGTTTTGATCCGCCAGCTCCTAGGGGTCGCCGCGaaga > 2:660224/1‑127 (MQ=255) tcttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCTGTGTCGTACCGCTATTT‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTc < 1:227361/129‑1 (MQ=255) tcGGTCTGGGTCGAAATGCAACCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGTCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGTTTTGCCAGCTCATTGAGGGCGCGGCGAATAGTCTGc < 1:485848/129‑1 (MQ=255) gCCTTGCGATCGTGCCACGGCGTGTTAACCGACCTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgag < 2:291714/129‑1 (MQ=255) gCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGTTCATTGAGGTCGCGGCGAATAGGCGGCGGGCTGACGGAGAAATg < 1:606382/129‑1 (MQ=255) cgctCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGTTCAGGTTTTGCTCCGTTAGTTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGc < 1:440656/126‑1 (MQ=255) tGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCTGCCATTTTATTGAGTTTGTTGTGAATAGTATGCGGGCTGACGGAGAAATGCTCTAcc < 1:33849/129‑1 (MQ=255) gCGTGTTAACCGAACTGGAAGGCAGCGCCACACCACAAAGA‑AAGCACAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt > 1:471838/1‑129 (MQ=255) ccggAAGGCCGCGCCGCCCCGCCAGGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGCATCGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa < 2:117959/127‑1 (MQ=255) ggAAGGCAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGTTCGCGGTGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCGCTGCGGTACTGACATAAcc < 1:589194/129‑1 (MQ=255) cAGCGCCGCCCCGCCATGA‑TGGCGCAGAATCAGAATTTACTCCACCAGCTCATTGAGATCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTCACATAACCctgcgg > 1:132832/1‑127 (MQ=255) cAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGTTGGTTGTCGTAGAAATGCTCTACCAGCTCTTCGGTACTGACAGAACCctgctg < 1:22820/129‑1 (MQ=255) aGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTTTACCAGCTCTTCGGTACTGACATAACCCTGCTGt < 1:113/129‑1 (MQ=255) ccGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATTGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGt < 2:282538/129‑1 (MQ=255) | GCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGA‑TGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGT > NC_000913/3560331‑3560570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |