| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 95.2% | 42.5 / ‑3.5 | 21 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (7/13); total (7/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 95.2% | 43.2 / ‑3.6 | 21 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (7/13); total (7/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGG > NC_000913/4296314‑4296499 || tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGTTTGATGCGATGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 1:62976/129‑1 (MQ=1) caggtatACGCCAGACAGCTCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAcc < 2:27311/123‑1 (MQ=11) ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGTC‑ATG‑TCTGAGACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:263143/129‑1 (MQ=11) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg > 2:293782/1‑129 (MQ=255) cGCCAGCCAGCGCCATAGCCTGATTTAGCGTGATTTTGTAGGTCAAAA‑AAG‑ACAATTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTATCTTAACCGTTGGTTa > 1:657695/1‑129 (MQ=11) cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTAGGAT‑AAG‑GCGTTTACGCCGCATACGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtcagtgc > 2:134372/1‑123 (MQ=11) ggcAGACAGCCCAATAGCCTGATTTTGCGTGATTTTGTAGGTCGGATCGTGTGGGGATT‑‑CGGAAACATAACTTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa < 2:639456/127‑1 (MQ=9) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt < 1:15013/129‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCGGGCCTATCTTAACCGTTGGTTAATTTTTc > 2:219231/1‑129 (MQ=14) cAGCGCAATAGCCTGATTTAGCGTGATTTTCTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGAAGCGACACTTGCCACGTCTTATCAGACCTATCTTAACCGTTGATTAAttcttc > 2:226111/1‑129 (MQ=14) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 1:639446/129‑1 (MQ=255) cTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTcaca < 1:397793/129‑1 (MQ=255) ctttGGCGTGATTCTGTGGGTCGGAT‑AGG‑GCGTTTACGCCGCATCCGACATCAATGCATGATGCAATGAATACGTGGTTTTTTCCGTCCTATCTTAACCGTTGGTTAATTTTTCAATCTCTTCACAccc < 2:640147/128‑1 (MQ=9) tttAGCGTGGTTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCg < 2:13144/129‑1 (MQ=18) ttAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCgg < 1:29021/129‑1 (MQ=255) gCGTGATTTTGTAGGTCGGAG‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCTTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTAt < 1:156735/129‑1 (MQ=18) ttttGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTACTTTTTCAAACTCTTCACACCCGGTATCAAAcc > 1:438475/1‑129 (MQ=18) ttGTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTTGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCt < 1:293782/129‑1 (MQ=21) gTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTATCCTTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 1:233109/129‑1 (MQ=21) gTAGGTCGGAT‑AAG‑GCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 1:391109/129‑1 (MQ=255) g‑gCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGATTGCCACGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCatg > 1:301784/1‑127 (MQ=25) || TCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT‑AAG‑GCGTTTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGG > NC_000913/4296314‑4296499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |