Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB‑5–insA‑5	insB‑5, insA‑5

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	50 [0]	[0] 50	insB‑5–insA‑5	insB‑5,insA‑5

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	49 (1.610)	39/238	0.0	100%	intergenic (‑305/+16)	flhD/insB‑5	DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA‑5/uspC	IS1 protein InsA/universal stress protein C

TACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1978368‑1978502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAA  >  NC_000913/1979279‑1979406                                                                                                                                                                                                                                                                         TACACTTATCTAAGATTTTTCTTAAATCGACGCAACTGTACTCGTCACTACACGCTCATACAACGGAGGGTGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACA                                                                                                                                        <  2:600934/129‑1   CACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGATGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATA                                                                                                                                      >  1:460039/1‑129          CTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAGCGGCGGGGGGCTGCGATTTTAAATAATGAGTGATGCAGATCACACAAAACACTCAATTACTTACCATGAATGTAa                                                                                                                               >  2:68459/1‑128          CTAAGATTTTTCCTAAATCGACGCAACTGTACACATAACTACACAAACATAAAACGGAGGGGGGCTGCGATTTTCAATAATGCGAGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTAT                                                                                                                               >  1:171306/1‑129              GATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGT                                                                                                                           >  1:449299/1‑129               ATTTTTCCTTATTCGACGCTCTGGTACTCGTCGCTACACGCACATACATCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTC                                                                                                                          <  2:591728/129‑1               ATTTTTCCTACGTCGACGCAATTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTC                                                                                                                          <  2:234713/129‑1               ATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTC                                                                                                                          <  1:601779/129‑1                  TTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATATTGCGTTATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATA                                                                                                                       <  1:598645/129‑1                          ATCGACGCAACTGTACTCGTGACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTT                                                                                                               <  2:1400/129‑1                             GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGCAATACTTAGGTTTcg                                                                                                            >  2:531388/1‑127                              ACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAATTCTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGG                                                                                                           <  1:613597/129‑1                                    CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACACAACACCCAATTACTTAACATAAATGTATACGCCATACTTTAGGTTTAGGTGTAT                                                                                                     >  2:471820/1‑129                                    CTGTACTCGTCACTACACGCACATACAACGGAGGGGAAAAAAGAAAATCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTAT                                                                                                     >  1:146379/1‑129                                             TCACTATACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATCATTAATGTATTAGTCATACTTTTGTTTTGGGTGTATTTCAATCTG                                                                                            <  1:135909/129‑1                                                 TACACGCACAGACAGCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAA                                                                                        <  2:185643/129‑1                                                   CACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAATTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAA                                                                                      <  1:532089/129‑1                                                   CACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATCTATAAGTCATACTTTCGTTTCGGGAGTAGTTCAATCTGTTACAA                                                                                      >  2:98364/1‑129                                                       CACATACAACGGAGGGGGGCTGCGATTTTCAATAATACGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTT                                                                                  >  1:207354/1‑129                                                        ACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATAATTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTT                                                                                 >  2:175621/1‑129                                                        ACATACAACGGAGGGGGGCTGCGATTTTCAATAATACGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTT                                                                                 >  1:365909/1‑129                                                              AACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCT                                                                           <  1:328658/129‑1                                                               ACGGAGGGGGGCTGCGATTTTCAATAATGCGTAATGCAAATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTA                                                                          >  1:213468/1‑129                                                                        GGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAA                                                                 >  1:270604/1‑129                                                                         GCTGCAGTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG                                                                <  1:331744/129‑1                                                                           TGCGATTTTCGATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCA                                                              <  2:71519/129‑1                                                                           TGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCA                                                              <  1:554715/129‑1                                                                            GCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAA                                                             <  1:247426/129‑1                                                                                TTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCATTTTGTTAAATTGTTTTTCGCTACGCGAGCAAGCAAAAAT                                                         <  1:270893/129‑1                                                                                 TTTCACTAATGCGTATTGCAGATCACACAAATCTCTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTATGTTAGTAAGCAAAAATG                                                        <  2:604617/129‑1                                                                                     AATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAC                                                    >  2:496822/1‑129                                                                                        AATGCGTAATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTAGAACTCATACTTTTGTTTTGGTTGTATTTCAATTTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG                                                 <  1:68459/129‑1                                                                                         ATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCACAAATAAAACAGGA                                                >  2:623106/1‑129                                                                                          TGCGTGATACAGATCACACAAAACACTCAATTACTTAACTTAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTTTATCTTTTTTTTAGTTTTTTGCTACGCGAGCAAGCAAAAATGAAACAGGAA                                               <  1:173997/129‑1                                                                                          TGCGTAATGCAGATCACACAAACCACTCATATCCGTAACATACACGCATATGTCATCCTTTTGTTTTGGCTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                                               <  2:397186/129‑1                                                                                               GATGCAAATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC                                          <  2:48498/129‑1                                                                                                ATGCAGTTCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG                                         <  2:412678/129‑1                                                                                                  GCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATAGAA                                       >  2:153322/1‑129                                                                                                    AGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT                                     <  2:270604/129‑1                                                                                                    AGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTAATTTGAGTAAATTTAAATCTGTTAAAAAGTTATTCGCTACGCTAGCAAGCAAAGATGAAACAGAAATAATCGAAAT                                     >  1:63642/1‑129                                                                                                             AAAACTCTCAATTTCGTAGCATAAAAGTATATGTCATTCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAATGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTG                            <  2:354639/129‑1                                                                                                                 CACTCAATTACTTAACCTAAATGTATAAGTCATACTTTTATATTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCA                        >  1:203946/1‑129                                                                                                                 CACTCAATTACTTAACATAAATGTGTAAGTCATACTTTTGTATTAAGAGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCA                        >  1:608759/1‑129                                                                                                                   CTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACA                      >  2:8990/1‑129                                                                                                                   CTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGAGATGTTACACACA                      >  2:10849/1‑129                                                                                                                     CAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGT                    >  2:407343/1‑129                                                                                                                       ATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTAAATGTATTAAAAACAATTAAAAAGTTTTTCACTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCA                  >  1:317743/1‑129                                                                                                                       ATTACTCAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAATCAAAATTTAAACAGGAATAATCGAAATGGGACGATGCGCACAGTCA                  <  1:46501/129‑1                                                                                                                           CTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAT              >  2:106916/1‑129                                                                                                                           CTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAT              >  2:7170/1‑129                                                                                                                             TAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAA            <  2:328700/129‑1                                                                                                                                       GTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGTTATTTTTGAAATTGGATGTTGCGCACAGTCAAAAAAACTCACCGTAA  <  1:471820/129‑1                                                                                                                                                                                                                                                                         TACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1978368‑1978502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAA  >  NC_000913/1979279‑1979406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.