| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,859 | Δ82 bp | [rph] | [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815859 | 3815940 | 82 | 27 [0] | [0] 27 | [rph] | [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815858 | 0 (0.000) | 24 (0.800) | 21/234 | 0.4 | 100% | intergenic (‑90/+5) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
| ? | NC_000913 | 3815941 = | 0 (0.000) | coding (609/687 nt) | rph | truncated RNase PH | |||||
CTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815724‑3815858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACA > NC_000913/3815941‑3816061 CTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCTTCTTACTTTTCTACAGACTAAAAAAATGTGACTC‑ATCAGTCGCCTGAAAAAGCAGTTTGCCAGCGCCGCC < 1:613587/129‑1 TGCTAAGCGCAAATTCCATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTCCTTTTCTACAGACTAAAAATAGGTGTCTC‑ATTTGTCGCTTTAAAAATCAGTTTGCCAGCGCCGCCTT < 1:519390/129‑1 CGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGT < 2:121728/129‑1 cacATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTCTCTACAGACAAATAAAATGCGACTC‑ATCAGTCGCCTTAAAAATCAGTGTGCCAGCGCCGCCTTCTGCCGTCC < 1:49376/126‑1 acttaAATGAACTCTCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGATTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCGTCTGCCGTCCCC < 1:372595/124‑1 AATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGTCTC‑TTTTTTTTCTTTAATTATCAGTTTGCCAGCGCCGCCGGCTGCCGTCCCC < 1:364381/129‑1 CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTACGACAGACAAAAAAAAGGCGACTC‑ATCAGACGCCTTACAAATCAGTATGCCCGCGCCACCTTCTGCCGTCGCCAGCA > 2:194126/1‑129 ATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAATAAAGGCGACTC‑ATCAGTCGTCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACT < 1:289745/129‑1 AACTGGCGCTGATATGGATTCATGCCTTCGCTACTAATCTAACTTGTCTACAGACAAAAAAAAGGCGAATC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCCCAGCCTTCTGCCGTCCACAGCCCTTCA > 2:33269/1‑129 TGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCG > 2:66816/1‑102 TGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCG < 1:66816/102‑1 GGCGCTGATATGGTTTCAGGCCTGCGCTCCTCATCTTACTTTTCTACAGACAAACAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGA < 2:620975/129‑1 GCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGC < 2:83587/129‑1 ATGCCTTCGCTCCTCCTCTTCCTTTTCTACAAACAAAAAAAAAGCAACTC‑ATCAGTAGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTC > 1:297149/1‑129 TCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCTGCCTTCTGCTGTCCCCTGTACTTTAATGATGCGTCCGACTTCGGTCATGACTACGTTCATGT < 1:435446/129‑1 TTACTTTTCTCCAGACAAAAAAAAGGCGACAC‑ATCAAAAACCTTAAAAATCAGTTTGCCAACGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCG > 1:516223/1‑129 aaaacGACAAGAAAGAGGCG‑CTCTATCAGTCGCCTTAAAAATCAGTTGGCCAGCGTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCGTCGGTCATCACTACGTTCATGTCGGTCTCTGC < 2:542048/124‑1 AGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCAACCGCTGCAGACAGACGACCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTAGGTCTCTGGGGCA > 1:380224/1‑129 CAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATAAGTTTACAAACGCCGACATATGCCATCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAG > 1:548093/1‑129 AAAGAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC < 2:315755/129‑1 AAAAAAAGGCGCCTC‑GTCCGTCGGCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC < 2:386931/129‑1 AAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCTGCATTTTGCCGTTCCCTGCACTTCTATGTTGCGTCTGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTC < 1:456532/129‑1 AAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTC < 2:122222/129‑1 AAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCATGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAAGTTCATGTCTGTCTCTACGGCAGAGTCTTC > 2:1051/1‑129 C‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCGCTGCACTTCACTGATGCGCCCGTCTTCGGTCATCACTACGTTAATGTCGGTCTCTGCGGCCGAATCTTCAACGAACTCCA > 2:87727/1‑129 AAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCGCAAACCGCTa > 2:140636/1‑128 CCAGCGCCGCCTTCTGCCGTCTCATGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTATTGCAGATCGCAAACCGCTTAGCCGTTCACA > 2:263211/1‑129 CCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACCATTCCc > 2:597478/1‑128 CCTGCTTCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCGCTGCGGCAGAGTCTTCAACGTATGCCAGATCGCAAGCCGCTTCGCCGTTCACAATTCCGACA < 2:23150/129‑1 GCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAT < 2:581838/53‑1 GCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAT > 1:581838/1‑53 CTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTC‑ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815724‑3815858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACA > NC_000913/3815941‑3816061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |