| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 1114 (34.570) | 229/252 | 0.0 | 97.6% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 28 (0.860) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
GCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTT > NC_000913/566655‑566898 | gCTCAGTTCGGACTGTAAGGAGCAAATGTATAAAAAAAAAAAAGACAAATATTCATTAACTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCtt > 1:3231/1‑129 (MQ=255)gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGCCGCATAAGAGCTTATCTCAACCGGACGGTGCCGCGGTAACAGGCGCAACCGTAATCTGATCtt > 2:439054/1‑129 (MQ=255)gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTAATTAACTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCtt > 1:473049/1‑129 (MQ=255) aggaggAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGTTGTGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGac < 1:652435/129‑1 (MQ=255) gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCGGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGacac < 1:350859/129‑1 (MQ=255) tATGACCGGCAAAGAGGCAATTATTCATTACCTGGGGACGAATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAAACGTGATCTGAGGTTAGCCAGCAATAACGGACACGCGGCTAAg > 2:530531/1‑129 (MQ=255) aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGAACACGCGGCTAagagag > 2:497832/1‑129 (MQ=255) cGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:261917/129‑1 (MQ=255) gggCAAGGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACTGTATTCTGTTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:186125/129‑1 (MQ=255) gggatagagGCGATGATTCATTCCCTGGGGAGGCATAGGAGCTCCTGTGTACAGGGCGTTGCCGCGGTAACAGGCGCGACCGTAATCTGATCTTACCCAGCAATAGTGGGCACGCGGCTAAGTGAGTaa < 2:543371/124‑1 (MQ=25) tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCAACGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg > 1:464880/1‑129 (MQ=255) ggggGCGCATAAGAGCTTTGTTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATTGTGTTTTCGCGGTTAAGTGAGTAAACTCTAAGTCAGAGGTGACTCACATg < 1:486096/129‑1 (MQ=21) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATCACAAAAAc > 2:425468/1‑129 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTATGTTAGTATATTTTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 1:305686/129‑1 (MQ=21) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGTGTAAACTTTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 1:495084/129‑1 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACAAAAAAAAGATCTTACCAAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAAAACAACAGt > 1:93857/1‑129 (MQ=18) gagCTTCTGTGCACAGGACGTTGCCGCGGTAACACGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAAGTGACTCACATGACAAAAACAGTa > 1:635009/1‑129 (MQ=255) gCTTCTGTGCACAGGACGTTGCCGCGGTAACAAGCGCAACAAAAATCAGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc > 1:485283/1‑129 (MQ=18) gtgCACAGGACGTTGGCGCGGTCACAGGCGCAACCGTAATCTGATCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGCACACTCTCAGTCAGAGGTGACTCACAGGCCAAGAACAGTGTCCACTAg > 2:377915/1‑129 (MQ=17) ccGCGGTAACAGGCGCAACCGTCATCTGATCTTACCAAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACCTGGCAAAAACAGTGTCAACCAGTAAGAAACCCCGGaa > 1:57424/1‑129 (MQ=17) gcgGTAACAGGCGCAACCGTAATCTGATCTTACTCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc < 2:485115/129‑1 (MQ=255) gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGAGGACACGCGGCTAAGGGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCACTAAAAAACCCCGTCAAc > 2:201369/1‑129 (MQ=255) cgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGAAACGCGACAAAAAAAGAAAACTCTCAGTCAGAGGAGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa > 1:620052/1‑129 (MQ=14) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGATACGCGGCTAAGTTAGTAAATTTTCAGTCAGAGTTGATTCATATGACTAATACAGTATAAACCAGTAAAAAACACCGTAAACAGCAt < 1:128365/129‑1 (MQ=14) cAGGCGCAACCGTACTCTGATCTTACCCAGAAATAGTAAACACGAAGCTAAGTGAGAAAACTATCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc > 1:78036/1‑129 (MQ=14) gcAACCGTAATCTAATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGCAACAACAAAAAAAAAAACCCGAAAACAGCATTAGcccg > 2:503855/1‑127 (MQ=11) gcGTAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGAAATCTCTCAGACAGAGGTGACTCACATGACAAAAAAAGAAGAAAACAGTAAAAAACACCATAAAAAGCATTAGACTGAAtt > 2:49138/2‑129 (MQ=11) cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAttt > 2:551606/1‑129 (MQ=11) | GCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTT > NC_000913/566655‑566898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |