| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 92.6% | 55.3 / NA | 27 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (12/13); total (12/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAA > NC_000913/2367977‑2368220 | cgcgCCCGCCCCCGCTATTTTGGTCAGCAAGTTAGCCGTCCATCCAGCAAGGAAAATGAATAATGAAAATCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGccgccg < 2:493834/129‑1 (MQ=255) cgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAATCCGTCTTTTTTGCCTACCACTT‑TTTTTGATGTCTCGGTATTGAAGCCATGCTGGCCGCCGGTTACg < 1:155076/129‑1 (MQ=255) cccGCTATTTTGTTCAGCAAGTTATCCGTCCATCCGGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAAt < 2:648579/129‑1 (MQ=255) cTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGCAATTacc > 2:544451/1‑127 (MQ=255) tttGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCa < 2:368123/129‑1 (MQ=255) tGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACAGACCCTCCTTAGTATCACGACCATTGAAT‑CGTATGTTTTGAAGCCATGATGGACGCCGGTTACGAAATTAGCGCCagt > 2:639541/1‑127 (MQ=255) gtCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCAtttt < 2:411721/128‑1 (MQ=255) cAGCAAGTTTTCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCTTACCACGA‑TATTGGATGCCTCGGTATTGAATCCTTGCTGGCCGCTGGTTACGAAATTAGCGCCATTTTTa < 1:529341/129‑1 (MQ=255) cAGCAAGTTATCCGTCCATCCAGCAAGGAAAAAGAATAAAGAAAACCGACGTATTTACCTACAACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTa > 1:141185/1‑129 (MQ=255) ccGTCCATCCTGCATGGAAAATGAATAATAAAAACAAACAATATAACATACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACGCATACTGAt > 1:467151/1‑129 (MQ=255) tccatccaGCAAGGAAAATGAATAATGAGAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAAt < 2:92899/129‑1 (MQ=255) gcatccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGTTGTTTATTTTTTTTGTGTTATTTTTACCCAGACGGATAATc < 1:544451/128‑1 (MQ=255) gAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAg > 2:137258/1‑129 (MQ=255) agaggAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGTATTTTGTGTCATTTTTAGCAATACTGATAATCCCGGGGAAAAAGcc < 1:223376/125‑1 (MQ=255) atcatGAAAACCGTCGTTGTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGCAGCCCTGCTGGCCGCCGGTTACTAAATTAGTGCCTTTTTTACCTATTCTGATAATCCCGGTGAAAAAGCCTTTTAt < 1:3612/126‑1 (MQ=255) gAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGACTCGATATTGAAGCCCTGCTAGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCTCGGTGAAAATGCCTTTTATTGTTc > 1:486593/1‑129 (MQ=255) aaCCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATACCGGTGAAACAGCCTTTCATGGTTCGGt > 2:266110/1‑129 (MQ=255) aaCCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCAATATTGAAAAACTACTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt > 1:396164/1‑129 (MQ=255) tttGCCTCCCAGAA‑TAGGGGATGCCGTGGTATTGAAGCTCTGCTGTCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATACGCCCGGGGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTg < 2:146449/129‑1 (MQ=255) ctcggcatGGGATGCCCCGTTATTTAAGCCCTGCTGGCCGCCTGTTACGAAATTAGCGCCATTTTTACCCATGCTGTTAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGaa < 2:420103/123‑1 (MQ=255) tGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGTTTTGGTGGTTCGTCTGGCGGCGGAAAGAGGCATTCCg < 1:137258/129‑1 (MQ=255) tCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGTCTTTTATGGTTCGGTGGCTCGTCTGTCGGCGGAAAGAGGCATGCCGGttt < 1:235/129‑1 (MQ=255) ggTAGTGAGGCCCTGCTGGCTGCCGGTTACGCGATTGGTGCCATGTTTACCCATGCTGATAGTCCCGGTGAAACAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAATGAGGCATTCCGGTTTAt < 2:440043/129‑1 (MQ=255) gTATTGAAGCCCTGATGGCCGCCGGTCACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATGCGCGTTTATg > 2:75648/1‑129 (MQ=255) tactgtaGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATTTTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATgc < 1:639541/123‑1 (MQ=255) ccTGCTGGCCGCCGGTTACGCAATTAGCGCCATTTTTACCCATACTAATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATaa > 1:604693/1‑129 (MQ=255) ccTGCTGGCCGCCGGTTACGATATTAGCGCAATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTTGCGCGTCTGGCGGCGGACAGAGGCGTTCCGGTTTATGCGCCGGagca > 1:52213/1‑126 (MQ=255) ccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCAAACTAATAATCACGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGAtga > 1:297426/1‑127 (MQ=255) | CGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGA‑TATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAA > NC_000913/2367977‑2368220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |