Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,184,543 | C→A | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,184,543 | 0 | C | A | 97.3% | 91.0 / NA | 39 | P1100Q (CCG→CAG) | rpoB | RNA polymerase subunit beta |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (20/16); total (20/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.59e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAC > NC_000913/4184422‑4184665 | attcAGCCTGTGGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATTCCTTACGATTATATCGGTTCGCCGGTAGACATCGTACTGAACCAGCTGGGc < 1:333327/126‑1 (MQ=255) aTCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCTTTACGTTGAAAACGGTAAGCCGGTAGACATCGTACTGAACCAGCTGGGc < 1:530959/129‑1 (MQ=255) ccAGCCTGGTGACACGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGt < 2:61259/129‑1 (MQ=255) ccAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTACAAAACGCAACCAGATCGAAGATATGACATACACTTACAGCGATACGCGGATTGGCAACGTACTGAACCAGCTGGGCga > 2:355548/1‑128 (MQ=255) cAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGAGAGTAATATATAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTa > 1:479802/1‑129 (MQ=255) ttGACAAGATGGCAGGTCGTCACGGTAACAAGTGTGTAATTTCTCAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGtctc < 2:484855/128‑1 (MQ=255) gttaCAAGATGGTAGCTCGTCACGGTAACAATGGTGTAATTTCTAGGAGCATCCCTATCGAAGTTATTCCTTACGCTGAAAACGGTACGCCGGTAGACATTGTACTGAACCAGCTGGGCGTACCGtctc < 2:138373/126‑1 (MQ=255) gACAAGATGGCAGGTCGTCACGGTCACAAGGGTGTAATTTATAAGATCAACACGATCGAAGATAAGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGAGCGTGCCGTCTCGt > 1:258200/1‑129 (MQ=255) gATGGCAGGTCGTCACGGTAACAAGGGTGTAATTAATAAGAACAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa > 1:337921/1‑129 (MQ=255) aTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAAc > 2:579176/1‑129 (MQ=255) aGGTCGTCACGGTAACAAAGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCgg > 1:546773/1‑129 (MQ=255) tcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCa > 2:533320/1‑129 (MQ=255) cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTAAGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAg > 1:82668/1‑129 (MQ=255) tcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAt > 2:152328/1‑129 (MQ=255) tcACGGTAACAAGAGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAt > 2:98340/1‑129 (MQ=255) gTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGACAGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACACCGGTCAGATCCTCg > 1:631243/1‑129 (MQ=255) acgtggTGTAAGTTCTGCGCACAACCCAATCGACGATATGCGTTACGATGAAAACGGTACGCCGGTAGGCAGCGGACTGAACCAGCTGGGCGTACCTGCTCTTATGAACATCGGTCAGATCCTCGAAAc < 2:166351/125‑1 (MQ=255) aaGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAATGTCTCCTCTGAACATCGGTCAGATCCCCGACAcc > 2:249772/1‑129 (MQ=255) ggTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAATCGGTACGCCGGTAGACTTCGTACTGTTCTTGTTGGTTGTACTGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc < 1:366262/129‑1 (MQ=255) gtAATTTCTAAGATCAACCCGATCGAAGATATACCTTACGATGAAAACGAAACGCCGAAAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACACACCTg > 1:218507/1‑129 (MQ=255) gtAAATTCTAAGATCAAGCCGATCGAAGATATGCCTTACGATGCAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCGAACCGTCTAGTACGAACATCGGTCAGACCCGCGAAACCCAcccg > 2:123738/1‑127 (MQ=255) aaTTTCTTAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGATATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTggg < 2:198997/129‑1 (MQ=255) aaTGTCTAAGATCAAACCGATCGAAGATATGCCTTAAGATGAAAACGGTTCGTCGAAAGACATCGTACTGATCCATCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAGCCGCGAAACCCACCTggg < 1:654843/129‑1 (MQ=255) aTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGTTGTACCTTCTTTTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGt < 1:284396/129‑1 (MQ=255) aTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGTGTATTGTCTCGTATGAACATCGGTCAGATCCGCGAAACCCACCTGGGt < 1:382328/129‑1 (MQ=255) aTTTCTAACATCAACCCGATCGAATCTATGCCTGACGATGAAAACGTTACGCCGGTAGACATCGTACTGATCCAGCTTGGCGTATCGTCTCTTATGAACATCAGTCAGATCCGCGAAACCCACCTGGGt < 1:470919/129‑1 (MQ=255) aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATAGTACTGAACCAGCTGAGCGTACCGCCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCt > 2:96628/1‑129 (MQ=255) tCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACAAAAATAGACATCATACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTAAGATCCTCGAAACCCACCTGGGTATGGCTGCGa > 1:4208/1‑129 (MQ=255) aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGaaa < 2:546773/129‑1 (MQ=255) aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCAGGTAAACATCGTACTGAACCAGCCGGGCGTACCCTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGTATGGCTGCGaca > 1:460227/1‑127 (MQ=255) gtcTTACGATGAAAACGGTACGCCGGTAGACATCCTACTGAGCTAGCTGTTCGTACCGTCTCGTATGATTATCTGTCAGTTTTTTGTTTTCTACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAt < 1:376496/127‑1 (MQ=255) cTTTCGATGAAACCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATTCTTGAAACTCACTTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCa < 1:529276/129‑1 (MQ=255) aCGATGAAACCGGTAAGCATCTATCTACCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACg < 2:272083/129‑1 (MQ=255) gATGAAAGCGGTACGCCGGTAGACATCCTACTGCACCGGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAACCCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGcc < 2:436563/129‑1 (MQ=255) aaCGGTACGCCGGTAGTCATCGTTCTAAACAAACATTGCATAAAATCACATATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTg > 1:298452/1‑129 (MQ=255) tACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCTTTTTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAca < 1:579176/129‑1 (MQ=255) tAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATAGATCAGATACTCGAAAACCACCTGGGTATGGCTGCGAAAGGTATCGGCGTCAAGATCAACGCCATGCTGAAACAGCAGCaag > 1:96543/1‑129 (MQ=255) cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTcgc > 2:589500/1‑129 (MQ=255) tGAGCCCGCTGGGCGGTCCTGCTCGCATGATCCTCTGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGTAAc < 2:159804/129‑1 (MQ=255) | ATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAC > NC_000913/4184422‑4184665 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |