| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 100.0% | 52.6 / NA | 13 | pseudogene (918/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (7/6); total (7/6) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 100.0% | 52.6 / NA | 13 | pseudogene (917/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (7/6); total (7/6) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAA > NC_000913/2173226‑2173469 || cACGATGCACGGCGACCGCCATCGCCACGAAAAAGCCGATGGTGGCAAAATAATAAATTAGTAACTTATGATTACCCGGCACACAAACAGCAATTAAAATAGTGAGTGGGATCAAAATCAACCTTGCCGATacgaccgacgac > 2:214875/1‑137 (MQ=255) cACGCCAACCGCCATCCCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCca < 2:127267/143‑1 (MQ=255) ggCGACCGCTAGCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACTTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagca < 2:180307/143‑1 (MQ=255) gCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagcag < 1:191127/143‑1 (MQ=255) cATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACGCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCGGCAACGCCg > 1:197906/1‑143 (MQ=255) gtggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGCGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCATCAACACCGGATAAAGGCCAATCAGGAACTc > 1:194354/1‑143 (MQ=255) gCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CAGCCGTATGTCCCAGCAGCAACGCCAGATCAAGACCAATAAGGAACTCCTg > 2:169838/1‑143 (MQ=255) gcagcaCCTGAGGTCCCGGCACACAGACAGCAAGTACAATGGCGGGGGGGAGAAAAATCAGGCTTGCCGATACCA‑‑CCGGCGTATGTCCCAGCACCAACGCCGGATCAAGGCCTATCAGGAACTCTTGACCGCCGAACTTCGcc < 2:48006/143‑1 (MQ=255) gcaCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGACGGATAAAGGTCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGt < 1:207742/143‑1 (MQ=255) gATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTCTGTCCCAGCAGCAACGCCGGATCCAGGCCAATCAGGAAATACTGACAGCCGAACATCGCCTGTAAACGa > 1:139/1‑143 (MQ=255) ccGGCACACAAACAGCAATTAAAGTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCACCAACGCCGGATCAAGGCCAATCAGGAACTCCTCACCGCCGAACTCCCCCTCGAAACGACTAcaa > 2:302245/1‑141 (MQ=255) acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGAAACCA‑‑CAGACGTAGGTCACAGCAGCAACGCGGGATACAGGCGCACCCGGAACTCCTGACCGCCGAACGCAGCCTGTAAACGAGGACGAGACTg > 2:43086/1‑143 (MQ=255) aaTTAGAATCGTGAGTGGGATAACAATCAGGCTGGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGCATCATGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg < 2:215210/143‑1 (MQ=255) tGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTCGCGATAGACGTTaaa > 1:300744/1‑143 (MQ=255) || CACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAA > NC_000913/2173226‑2173469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |