New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	479 (32.450)	193/262	NT	95.5%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	23 (1.550)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566636‑566905                                                                                                                                              |                                                                                                                                 gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                                                                                                 <  1:244199/143‑1 (MQ=255)        gCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTCAc                                                                                                                          >  2:222062/1‑143 (MQ=255)          aGAAATCAAAGCTAAGTTCGGACTGAAAGTAGCAAGTGTATGACGGGCAAAGACGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAccc                                                                                                                        <  1:265108/143‑1 (MQ=255)                   aGCTATGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                               <  1:129539/143‑1 (MQ=255)                        aGTTCGGATTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCATACGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGAAATAGTgcata                                                                                                          <  2:148518/143‑5 (MQ=255)                          ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg                                                                                                        >  1:43732/1‑143 (MQ=255)                                   aaaGGAGCAAGTGTATGACGGGGAAAGAGGCAATTATTCATCACCTGAGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACGGTCAGCGGAACTTACAAAGCAATAAAGGACACGCGGCAAAgc                                                                                               >  2:152898/1‑142 (MQ=255)                                                         cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAGGTGAGTCTGCTCTCCGTCAGAGGt                                                                         >  1:267130/1‑143 (MQ=38)                                                          aaaGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAACTCACAAAACTACCAGGCAGAGGTg                                                                        >  2:32151/1‑143 (MQ=38)                                                           acgagGCAATTATTCATTACCTGGGGACGCATAAAAGCTTCTGTGCACAGGACGTTGCCGCGGTAACCGGCGCAACAGTAATCTGATATTACCCAGCAATAGTGGACACGCGGCTAAGAGAGTAAACTCGCACACAGAGGTGa                                                                       >  2:240960/3‑143 (MQ=37)                                                             gagGCAATTATTCATTACCTGGGGACGCATAAGAGATTCTGTGCACAGGAAGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCAGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt                                                                     >  2:113379/1‑143 (MQ=255)                                                                 cAATTAGTCGTGACCTGGGGACGGATAGGAGCTTCTGTGCGCGGGGGCTTGCCGGCGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                 <  2:33781/143‑1 (MQ=18)                                                                                   ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCag                                               >  1:139719/1‑142 (MQ=255)                                                                                      cGCATAAGAGCTTGTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                            <  2:43001/143‑1 (MQ=255)                                                                                                                          tAACATGCGGAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAATAAACCCCGTAATCAGCATTCACCTGAATTTc        <  2:266395/143‑1 (MQ=11)                                                                                                                             ctggCGCAACTGTAATCTTATCTTTCCCAGCAAGAGTGGACACGCGGGTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa     <  1:240968/141‑1 (MQ=11)                                                                                                                                gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg  >  1:184524/1‑143 (MQ=35)                                                                                                                                              |                                                                                                                                 GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566636‑566905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.