New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1782 (28.980)	270/280	0.0	96.5%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	65 (1.050)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGC  >  NC_000913/566638‑566909                                                                                                                                            |                                                                                                                                     agagcacAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                   <  1:874482/137‑1 (MQ=255) agagCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                   <  1:738075/143‑1 (MQ=255)  gagcGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGTGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                  <  1:761744/140‑1 (MQ=255)  gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                  <  1:884691/143‑1 (MQ=255)      gCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAc                                                                                                                              >  1:607598/1‑143 (MQ=255)        aGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGCCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAccc                                                                                                                            >  2:657878/1‑143 (MQ=255)              tAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAGCCAGCAAt                                                                                                                      >  2:780624/1‑143 (MQ=255)               aaaGCTGATTTCGGATTGATAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGTCGCATAAGAGCTTCTGTGCACAGTACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                                                                                                     <  2:248957/143‑1 (MQ=255)                 aggtAAGTTCGGAATGAAAGGAGCAGGGGTATGACGGGCAAAGAGGCAATGATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCAGAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                   <  2:509274/140‑1 (MQ=255)                        ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACAcg                                                                                                            >  2:110901/1‑143 (MQ=255)                         tCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc                                                                                                           <  1:628891/143‑1 (MQ=255)                           ggACTGCAAGGAGCAAGGTTAGGCCGGGCACAGCGGCACTTATACATTACCTGGGGACGCATCAGAGCTTCTGTGCACAGGACGTTGCCGCGGTACCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                         <  2:636248/143‑1 (MQ=37)                           ggACTGAAAGGAGCAAGTGAATGACGGGCAAAGAGGCAATTAGTCATTACCGGGGGACGCATAAGAGCTTCCGTCATCAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                         <  1:714322/143‑1 (MQ=38)                             aCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt                                                                                                       >  1:767146/1‑143 (MQ=255)                               tGAAAGGAGCAAGTGTATGACGGGCACAGAGGCAAATAAGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGAGCAACCGTAATCTGATCTTACCCAGAAATAGGGGACAcgagacaag                                                                                                     >  2:83145/1‑136 (MQ=255)                                 aaaGGCGCAAGTGTATGACGGGCAAAGAGGCAATTACTCATTACCTGGGGACCCATAAGAGCTTCTGTGCACAGGACGGTGCCGCGGTAAGAGGCGCGACCGGACTCTGATCTTACGCAGCAACAGCGGACACACggacgcgt                                                                                                   >  2:582523/1‑137 (MQ=255)                                 aaaGGAGCAAGTGTCTGACGGGCACAGCGCCACTTATGCATTACCTGGAGACGCACAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                   <  1:522245/143‑1 (MQ=38)                                 aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACCCGCGGCAAAGt                                                                                                   >  1:145180/1‑143 (MQ=255)                                   aGGGGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                                                                                                 <  2:641776/143‑1 (MQ=255)                                     gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGGCACGCGGCGAAGTGAGt                                                                                               >  1:558749/1‑143 (MQ=255)                                     gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt                                                                                               >  2:638085/1‑143 (MQ=255)                                         aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATGTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGttacc                                                                                           >  1:418801/1‑139 (MQ=255)                                         aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACACAGCAATAGTGGACACGCGGCAAAGTGAGTAAAc                                                                                           >  1:177589/1‑143 (MQ=255)                                            tgtATGACGGGGAAGGAGGCAATCAGCCATTACCTGGGGACGCATAAGAGCTTCTGGGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                        <  2:164132/143‑1 (MQ=37)                                              tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCCACCGTAATCTGCTCTTCCCCAGCAATCGTGCACACACAAATAAGTAAGTAAACACtca                                                                                      >  1:626576/1‑143 (MQ=255)                                                tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt                                                                                    >  1:185191/1‑143 (MQ=255)                                                 gACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCACTAGTGGACACGCGGCTACGTGAGTCCACTCtcagtc                                                                                   >  1:234812/1‑143 (MQ=255)                                                    gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTCCGTGAGTAAACTCTCTGTCaga                                                                                >  1:788293/1‑143 (MQ=255)                                                         aaGAGGCAATTATTCATTACCTGGCGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa                                                                           <  2:104856/143‑1 (MQ=255)                                                          agagGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGCTAACAGGCGCACCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGACAGGTGAGCAAACTGCAAGTCAGAGGCGAc                                                                          >  2:124329/1‑143 (MQ=37)                                                             ggCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca                                                                       <  2:548782/143‑1 (MQ=255)                                                              gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACCcag                                                                      >  2:655346/1‑142 (MQ=255)                                                                aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAGAACTCTCAGTCAGAGGTGACTCAGAt                                                                    >  1:1029615/1‑143 (MQ=255)                                                                  ttgctcgttACCTCGGGACGCATAAGAGCGTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                  <  2:944496/136‑1 (MQ=21)                                                                      tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTCAGTAAACCCTCAGTCAGAGGTGACTCACACGACaaa                                                              >  2:144844/1‑143 (MQ=255)                                                                          taccgtgggACGGATAAGAGCTTCTGTGCATAGGATGTTGGCGCGGTAACAGGCGCAACCGTAATGTGATGTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                          <  2:92573/137‑1 (MQ=18)                                                                          tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                          <  2:1122909/143‑1 (MQ=255)                                                                            ccTGGGGCCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt                                                        <  1:436231/143‑1 (MQ=255)                                                                            ccTGGGGACGCATAAGAGCTTCTGCGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt                                                        <  1:70970/143‑1 (MQ=255)                                                                             cgggggGCGCATAAGGGCTTGTGTGCACAGGCCGTTGCCGCGGTAACGGGCGCAACCGTAATCTGATCTTGCCCGGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa                                                       <  2:1035794/141‑1 (MQ=18)                                                                               ggggACGCATAAGAGCTTCTGTGCGCAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCGATAACAGTATc                                                     >  1:627480/1‑143 (MQ=255)                                                                                  gACGCATAAGATCCTCTGTGCACATGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                  <  2:537607/143‑1 (MQ=255)                                                                                       aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACACAAACAGTATCAACCAGTa                                             >  1:546622/1‑143 (MQ=255)                                                                                       aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                             >  1:236557/1‑143 (MQ=255)                                                                                             gcgtCTGTTCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAc                                       <  2:185191/140‑1 (MQ=255)                                                                                               ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                     >  1:1060038/1‑143 (MQ=255)                                                                                                   gtgAACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTAACCAGCAATAGTGGACAGGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAGGACCAAACCATCACCAACAAGCAAAAAACCCCGTa                                 >  2:783276/1‑143 (MQ=17)                                                                                                    tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaa                                <  1:888192/143‑1 (MQ=255)                                                                                                         aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGGATCAACCAGTAAAAAACCCAGTAAAGAGc                           >  1:30656/1‑143 (MQ=255)                                                                                                          ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                          <  2:380053/143‑1 (MQ=255)                                                                                                          ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                          >  1:951387/1‑143 (MQ=255)                                                                                                                 gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt                   >  1:1047149/1‑143 (MQ=255)                                                                                                                  ccgccgTAACAGGCGCAACCGTAATCTGATCTTACCCAGCCATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGACGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg                  <  1:807702/143‑1 (MQ=255)                                                                                                                   cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGCGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa                 >  2:97953/1‑143 (MQ=255)                                                                                                                   cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCCCATGAAAAAAACAGTAACAACCAGTAAAAAACCCCGGAAACCGCGCTCGCCTGa                 >  2:647408/1‑143 (MQ=14)                                                                                                                   cgcgGTAACAGCCGCAACCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAACAACCCGTAACAAACCCCGAAAAAAGCATTCGCCTGa                 >  2:588508/1‑143 (MQ=14)                                                                                                                        tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTc            <  1:745985/143‑1 (MQ=40)                                                                                                                         aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg           <  2:1060038/143‑1 (MQ=40)                                                                                                                           cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa         <  1:174040/143‑1 (MQ=38)                                                                                                                              gcgcAACCGTAATATGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGCGACACACATGAGAAAAACAGTAGCAAACAGTAAAAAACCCCGTAAAAAGCATACGCCAGAATGTCGcgggg      >  2:1078250/1‑139 (MQ=11)                                                                                                                              gcgcAACCATAATCTGATCTTACCCAGCAATAGGGGACACGCGGCGAAGTGATTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg      <  1:284904/143‑1 (MQ=255)                                                                                                                                gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa    <  2:767146/143‑1 (MQ=34)                                                                                                                                gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAATGaa    >  1:1119141/1‑143 (MQ=21)                                                                                                                                gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCACACTGaa    >  1:1091228/1‑143 (MQ=21)                                                                                                                                  caCCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc  <  1:108292/142‑1 (MQ=17)                                                                                                                                  aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGATGACTCACATGACAAAAACAGTATCAACCAGTACAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc  >  1:458139/1‑143 (MQ=17)                                                                                                                                            |                                                                                                                                     AGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGC  >  NC_000913/566638‑566909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.