Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]	[rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	57 [0]	[0] 57	[rph]	[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	52 (0.900)	47/262	0.1	100%	intergenic (‑90/+5)	pyrE/rph	orotate phosphoribosyltransferase/truncated RNase PH
	?	NC_000913	3815941 =	0 (0.000)					coding (609/687 nt)	rph	truncated RNase PH

ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815799‑3816080                                                                                                                                               |                                                                                                                                            acacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgacagcgccgccttctgcc                                                                                                                                             >  1:11509‑M2/143‑143 (MQ=255)     ctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttggctccccaccttactccgccacagacaaaaaacaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGcc                                                                                                                                         >  2:807429‑M2/139‑143 (MQ=255)        cttgttaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCt                                                                                                                                      <  2:575402‑M2/8‑1 (MQ=255)          tgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                    >  1:720844‑M2/134‑143 (MQ=255)            ctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGCCCCCTGCAc                                                                                                                                  >  2:1022033‑M2/132‑143 (MQ=255)             taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccaccttctgcCGTCCCCTGCACt                                                                                                                                 >  2:681071‑M2/131‑143 (MQ=255)              aagcgcaaattcaataaattggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                <  1:596870‑M2/14‑1 (MQ=255)               agcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgacttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGAACTTc                                                                                                                               >  1:1066794‑M2/129‑143 (MQ=255)                  gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaacaaaggcgactcatcagtcgccttaaaaatcagtttgcctgcgccgccttctgcCGTCCCCTGCACTTcaaa                                                                                                                            >  2:732460‑M2/126‑142 (MQ=255)                       ttttataatctggcgctgatatggtttcatgccttcgctcctcatctgacttggctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                       <  1:844681‑M2/23‑1 (MQ=255)                         caataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                     <  2:870625‑M2/25‑1 (MQ=255)                                ctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCCGCACTTCAATGatgctccccgctt                                                                                                              >  1:672197‑M2/112‑138 (MQ=255)                                ctggcgctgatatggtttcatgccttcgctcctcatcttacttgtctacagacaaaaaaaaggcgacccatcagtcgccttacaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCCATGATCCGCCCgtcct                                                                                                              >  2:766852‑M2/112‑141 (MQ=255)                                  tgcgctgatatgctttcatgccttcgctcctcaccttacttttctacagacaaaaaaaaggcgacgcatccgtcgccttaaaaatccgtttgccagcgccgccttctgcCTTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                            <  2:592559‑M2/34‑1 (MQ=255)                                  ggcggtgatatggtttcatgccttcgctcctcatcttacttttcaacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                            <  2:601552‑M2/34‑1 (MQ=255)                                   gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGACGCGCCCGCCTTcgt                                                                                                           >  2:814981‑M2/109‑142 (MQ=255)                                     gctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGTCTtcggcc                                                                                                         >  2:1097899‑M2/107‑141 (MQ=255)                                      ctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGgtcc                                                                                                        >  1:391728‑M2/106‑142 (MQ=255)                                       tgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                                       <  2:581089‑M2/39‑1 (MQ=255)                                           atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCAGCACt                                                                                                   >  1:243928‑M2/101‑143 (MQ=255)                                              gtttcatgccgtcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgacgccatctgtCTTCCCCTGCACTTCCCTGCAGTGCCGGTCTGCGGTCATCACTACg                                                                                                <  1:834671‑M2/46‑1 (MQ=255)                                                ttcatgccttcgctcctcatcttactcttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                              <  1:753951‑M2/48‑1 (MQ=255)                                                   atgccttcgctcctcatcttacttttcgaccgacaaaaaaaaggcgacccagtagtctcctgaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                                                           <  1:1127442‑M2/51‑1 (MQ=255)                                                       cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                       >  1:1029781‑M2/89‑143 (MQ=255)                                                       cttcgctcctcatctcactttcctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                       <  1:426774‑M2/55‑1 (MQ=255)                                                         tcgctccccatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                     <  2:465369‑M2/57‑1 (MQ=255)                                                                 catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagattgccagcgccgccttctgcCGTACCCTGCACTTCAATGATGCGCGCGCCTTCGGTCATCACTAGGTTACAGTCCGTCTCTGTgg                                                                             >  2:565662‑M2/79‑143 (MQ=255)                                                                   tcttccttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                           <  1:105467‑M2/67‑1 (MQ=255)                                                                   tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTCCGTTCATGTCGGTCTCTGCGGCa                                                                           >  1:540578‑M2/77‑143 (MQ=255)                                                                       acttttcttcggactacaagacgtcgacgcatcagtcgccttaaatgtcagtgtgccagcgccgccgtctgcCGCCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt                                                                       <  2:525864‑M2/71‑1 (MQ=255)                                                                           ttctacggacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTc                                                                   <  1:998990‑M2/75‑1 (MQ=255)                                                                            tctacagcctaataagaggcgacgcatcggtcggcttaaaaatcagttggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                                  <  2:821486‑M2/76‑1 (MQ=255)                                                                              tactgacaaaaaaaaggccacgcatcattcgccttataaatcagtttgccaccgccgccctcttcCCTCCCTTGCACTTCATTGATGCACCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                <  2:131229‑M2/78‑1 (MQ=255)                                                                              tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                >  2:613297‑M2/66‑143 (MQ=255)                                                                               acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGAGGAGACCGGTTTCTGTTGCCACTACCTTCATGTCGGTCTCTGCAGGAGAGCCGTCAACg                                                               >  2:804806‑M2/65‑143 (MQ=255)                                                                                   acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                                                           >  2:884040‑M2/61‑143 (MQ=255)                                                                                    caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                          <  2:638174‑M2/84‑1 (MQ=255)                                                                                       ttttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg                                                       >  1:739518‑M2/57‑143 (MQ=255)                                                                                        aaaaagggtgctcatcagtcgccttaaaaaccggttcgccagcgccgcctgctgcCGTCCCCTGGACTTCAATGACGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                      <  1:158825‑M2/88‑1 (MQ=255)                                                                                        aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                      <  1:423045‑M2/88‑1 (MQ=255)                                                                                                 actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTATGCGGCAGAGACTTCCACGTGTTCCATCTCACAAaca                                             >  1:1053054‑M2/47‑142 (MQ=255)                                                                                                  ctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCCCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCCGCCGACCCTTCAACCTCTTCCAGat‑gcaaaaacg                                           >  2:155440‑M2/46‑139 (MQ=255)                                                                                                     atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGTGGCAGAGTCTTCCACGTATTCCAGATCGCATACCGCtt                                         >  1:565198‑M2/43‑143 (MQ=255)                                                                                                     atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGATCATCACTACGTTCATGTCGGTCTCTTCGGCAGAGTCTTCAACGAATTCCAGAACGCAAACCGCtt                                         >  1:243741‑M2/43‑143 (MQ=255)                                                                                                      tcagtcgccttaaaaatcagtttgccagcaccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                        >  1:641059‑M2/42‑143 (MQ=255)                                                                                                        agtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGc                                      <  2:889344‑M2/104‑1 (MQ=255)                                                                                                            ccctcaaaaatcactttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCCGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                  <  1:71942‑M2/108‑1 (MQ=255)                                                                                                               ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGCTCATCACTCCGTTCATGTCTGTCTCTGCGGCCGAGCCTTCACCGTCTTCCAGCCCGCAAAGCGCCTCGCCGTCcac                               >  2:874366‑M2/33‑143 (MQ=255)                                                                                                                    aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCCGATCGCAAACCGCTTCGCCGTTCACaatcc                          >  2:1064470‑M2/28‑141 (MQ=255)                                                                                                                      tcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCg                        <  1:1022033‑M2/118‑1 (MQ=255)                                                                                                                       caccttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa                       <  1:765557‑M2/119‑1 (MQ=255)                                                                                                                             gccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTATTCGGACATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGaaa                 >  1:814467‑M2/19‑143 (MQ=255)                                                                                                                                       ccttctgcCGTCCCCTGCACTTCAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCTCCGTTCACAATTCAGACAGAAACTGCGGCTAc       <  2:350749‑M2/135‑1 (MQ=255)                                                                                                                                          tctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCAGCTACCAt    <  2:117317‑M2/138‑1 (MQ=255)                                                                                                                                          tctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATGCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCAt    <  2:172139‑M2/138‑1 (MQ=255)                                                                                                                                            tgcCGTCCCCTTCACTTCGATGTTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACTTATTCCAGTTCGCTATTTGCATCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  <  2:243741‑M2/140‑1 (MQ=255)                                                                                                                                            tccCGTCCCCTTCACTTCACCCATGCCCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  <  1:198202‑M2/140‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815799‑3816080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑