| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 97.1% | 85.1 / ‑5.5 | 36 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (24/10); minor base A (1/0); total (25/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.16e-01 | |||||||||||
TCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCG > NC_000913/2367963‑2368233 | gcTACAGCGCCGTCGGCGCCCGTCCCTGCTAGTTTTTTCTGCTATTTTTCCGTCCATCCAGCGAGGAAAATGAATTTTGAATTCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGccgccg < 2:544376/142‑1 (MQ=255) acacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGtt > 1:759317/1‑143 (MQ=255) cacCGATGTCCGCGCCCGCCCCCGCTTTTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTa < 2:1076753/143‑1 (MQ=255) cacCCATGTCCGCTCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAATATGAATATTTATTTCCGTCGTTTTTGCATACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTa < 1:933990/143‑1 (MQ=255) ccGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGCTATGGGCTGCCTCGGTGTTGTAGCCCTGCTGGCCCCCGGCTAAGAAATTaa > 1:461956/1‑142 (MQ=255) ccGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCAGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAg > 1:637248/1‑143 (MQ=255) ccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCATCGGTATTGAAGCCCTACTGGCCGCCAGTTAAGAAAGTAGCACCAt > 2:841527/1‑143 (MQ=255) gcccTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAc < 2:650991/140‑1 (MQ=255) ccGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAc > 2:944193/1‑143 (MQ=255) cGCTAGTTTGTTCAGCAAGTTGTCCGACCAGCCAGCAAGGAAAATGAATGATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAcc < 2:39064/143‑1 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGatcatc > 1:940246/1‑143 (MQ=255) aTCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCAATACTGATAATCAAGGTGaa > 1:82500/1‑143 (MQ=255) cGTCCATCAAGCAACGAAAATGAATAATGAAAACCGTGGTTTTTGCCTACCACGATATGGGATGTCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 1:166101/143‑1 (MQ=255) gTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGTATGCCGCGGTATTGAAGCCCTGCTGCCCGCCGGTTGCGTTTTTCGCGCCTTTTTTACATATAATAATAATAACGAAGAAAAAg > 1:9985/1‑143 (MQ=255) tccatccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCGATACTGATAATCCCGGTGAAAACGc > 2:374960/1‑143 (MQ=255) tcgaGCGAGGAGAGTGAATAGTGCAACACGTCGTTTTTGAATAGAACGGTAGGGGATGCCTCGGTATTGAAGCCCTTCTGGCGGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCttt < 2:675198/140‑1 (MQ=255) aGGAAAATGAATAGTGAAGTCCGTCGTTTTGGCCTACCACGATATGGGATGCCTCTGTATTGAAGCCCTGCTGGCCGTCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGtt < 2:659416/143‑1 (MQ=255) gAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGTTTCCTTTTTTGTCGTCATTTTTACCCATAATGATAATCCCGGAGAAAAAGCCTTTTATGGTTCg > 1:282226/1‑143 (MQ=255) tGATAACCGTCGTTTTGTCCTACCACGATATGTGATGCCTCGGTATTGATGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACTCATACTGATAATCCCGGTTAATAAGCCTTTTATGGTTCGGTGGCTCGTCTg < 2:596786/143‑1 (MQ=255) tGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGtaag > 2:411444/1‑140 (MQ=255) aaaCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTATTATGGTTCGGTGGCTCGTCTggcg > 1:433242/1‑143 (MQ=255) cgtcgtTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGACATTAGCGCCATTTTTACCCATACTGATAATCCCGCTGACAAAGACTTTTATTGTTCTCTGGCTCGCCTGGcggcgg > 1:36459/1‑143 (MQ=255) tttttGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAaga < 2:759317/143‑1 (MQ=255) gtttttcTACCACGATATGGGATGCCTCGGTATTGAAGCACTGCTGGCCGCCGGTTACGATATTAGCGCTATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGTTGGCTCGTCTGGCGGCGGAAagag < 2:486741/137‑1 (MQ=255) tACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGCAcgagccctccc > 1:347586/1‑136 (MQ=255) aCCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCg > 1:1106517/1‑143 (MQ=255) ggATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTGACGAAATTAGCGCCATTAATAACAATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGCTGGCTCGTCTGGCAGCGGAAAGAAGCATTGCGGTTTATGCAcc > 1:79417/1‑143 (MQ=255) cTCGGTATTGAAGCCCTGCTGGCAGCCGGTTACGAAATTAGCGCCATTTTTACTCATCCTGATAGTCCCGCTCCAAAAGCCTTTTCTGGTTCGGTCGCTCGTCTCGCCGCGGAAAGAGGCATTGCGGTTTATGCGCCGGATaa > 2:441381/1‑143 (MQ=255) tCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAACAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGGCTTCCAGTTTATGCGCCGGATAAc > 2:755938/1‑143 (MQ=255) ccgttATTGAAGCGCTGCGGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCTTGTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCTGTTTATGCGCCGGATAAc < 2:247778/139‑1 (MQ=255) gTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTTGTATGAAGGCGGAAAGAGGTTTGCCGGTTTATGCTGCGGATAACCtt > 1:881041/1‑143 (MQ=255) ttGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAGAGAGGCATTCCGGCTTATGCGCCGGATAACgcagat > 2:644148/1‑138 (MQ=255) tGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCAGGTGAAAAAGCCTTTTATGGTTCGGTGGCTAGTCTGGCGGCGGGAGGAGGCATTCCGGTTTAGGGGCCGAGTAACGTTaagc > 2:704540/1‑141 (MQ=255) gAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTGTTGTTTGAAGGGTAGCCGCTCTTCGGAAAGAGGCATTCCGGTTTATGCGCCTGAGAACGCTAacca > 2:239298/1‑143 (MQ=255) aaGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGCAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTCaagtct > 2:459785/1‑139 (MQ=255) cccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCg > 2:726150/1‑143 (MQ=255) cccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCACTCCGGTTTATGCGCCGGATAAAGTGAATCATACg > 1:796206/1‑143 (MQ=255) | TCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCG > NC_000913/2367963‑2368233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |