mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.7% | 70.8 / 55.9 | 75 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 125 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 569149 = | 2028 (32.740) | 57 (1.000) | 19/260 | 2.6 | 3.1% | coding (248/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569173 = | 1673 (29.300) | coding (272/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 570695 = | 2303 (37.180) | 24 (0.410) | 17/268 | 3.2 | 1.1% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 2178 (37.000) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568559 = | 1961 (31.660) | 35 (0.590) | 17/270 | 3.2 | 1.8% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 1847 (31.150) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 568678 = | 2154 (34.780) | 20 (0.340) | 15/268 | 3.7 | 0.97% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2020 (34.320) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | = 569159 | 1816 (29.320) | 47 (0.820) | 14/260 | 3.8 | 2.7% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 1673 (29.300) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 392313 = | NA (NA) | 25 (0.420) | 14/274 | 4.1 | NA | noncoding (654/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 392344 = | NA (NA) | noncoding (623/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 572316 = | 1915 (30.920) | 26 (0.450) | 11/262 | 4.8 | 1.5% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 1631 (28.340) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 568556 = | 1934 (31.230) | 16 (0.260) | 12/278 | 4.8 | 0.83% | coding (242/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568579 = | 1939 (31.760) | coding (265/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 570701 | 2304 (37.200) | 12 (0.200) | 10/268 | 5.3 | 0.55% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 2178 (37.000) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 2729955 = | NA (NA) | 9 (0.150) | 9/270 | 5.7 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA | |||||