New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2490 (43.830)	252/262	NT	97.7%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	58 (1.010)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCC  >  NC_000913/566635‑566910                                                                                                                                               |                                                                                                                                      cGAAGATCGCAGAAAGTAAAGCTAAGTGCGGGCTGAAAGGAGCAAGTGTATGACGGGCCAAGATGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt                                                                                                                                       <  2:980370/143‑1 (MQ=255)   aaGATCGCAGAAATTAAAGCTAATTTCGTACTGATTGGAGCAAGTGTATGACGGGCAATGAGTCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                                     <  1:356547/143‑1 (MQ=255)      aTCGCAGAAAGTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCt                                                                                                                                  <  1:767703/143‑1 (MQ=255)          cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGGATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                              <  2:758525/143‑1 (MQ=255)             aaaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCACCCGTAATCTGATCTTGCCCAg                                                                                                                           >  2:448391/1‑143 (MQ=255)             aaaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg                                                                                                                           <  2:236035/143‑1 (MQ=255)             aaaTTAAAGCT‑AGTTCGGACTGAAAGGAGCAAGAGTATGAAAGGAAAAGAGGCAATTATTCATTACCAGGGGAAGAATAAGAGCTTCAGAGCAAAGGAAGTTGATGAGGTAACAGGCGCAACCGTAAACTGACCATACCCAgt                                                                                                                          >  2:344241/1‑142 (MQ=255)                   aaGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                                                                                                     >  1:885774/1‑143 (MQ=255)                     gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCCTCTGTGCACAGGACGTTGACGGGGTAACAAGCCCAACCGTAATCTGATCTTACCCAGCCGTAGTg                                                                                                                   >  2:797259/1‑143 (MQ=255)                     gCTAAGGTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGGCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAAACTGACCCGACCCAGCAAtcggg                                                                                                                   >  2:514161/1‑139 (MQ=255)                      cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATCGTgg                                                                                                                  >  2:354342/1‑143 (MQ=255)                            tCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCGGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc                                                                                                            <  1:329709/143‑1 (MQ=255)                              ggACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                          <  1:196056/143‑1 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCCATTATTCATTACCTGGGGACGCGTAAGAGCTTCCGTGCACAGGACGTTGCCGCGGTATCAGGCGCAACAGTAATCTGATCTTACCCAGCCATAGTGGACACGCGGATAAGt                                                                                                    >  2:11267/1‑143 (MQ=38)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAGTAGTGGACACGCGGCGAAGt                                                                                                    >  1:248236/1‑143 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                    >  1:857425/1‑143 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGCAATCTGATCCTGCCCAGCCCTAGTGGACACGCGGCTAAgc                                                                                                    >  2:353448/1‑142 (MQ=255)                                     aaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCAAGCAAAAATGGACACGCGGCTACGTg                                                                                                   >  2:274381/1‑143 (MQ=255)                                          gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCGGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACACGGCTAAGTGAGTaa                                                                                              >  2:840442/1‑143 (MQ=255)                                           cAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                             <  2:645979/143‑1 (MQ=255)                                             aGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCGATAGTGGACACGCGGCTAAGTGAGTACAct                                                                                           >  1:806144/1‑143 (MQ=255)                                                 tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                       >  1:915348/1‑143 (MQ=255)                                                   tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACTCtcagt                                                                                     >  1:187425/1‑143 (MQ=255)                                                    taCGGGCAAAGAGGCAATTATTCAGTGCCTGGGGACGCAGAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc                                                                                    <  1:301252/142‑1 (MQ=255)                                                    gACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc                                                                                    <  2:820499/143‑1 (MQ=255)                                                     aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGGATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTGAGTGAGGCAACTCtgtgtca                                                                                   >  1:733726/1‑143 (MQ=38)                                                        ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                                <  1:977833/143‑1 (MQ=255)                                                                 gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGtgactgac                                                                       >  1:788918/1‑143 (MQ=255)                                                                 gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTAGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAATcac                                                                       >  2:634812/1‑143 (MQ=255)                                                                  cAATTATTCATTACCTGGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                      <  2:56543/143‑1 (MQ=255)                                                                     ttattCAGTACCTGGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcacttag                                                                   <  2:992542/143‑5 (MQ=25)                                                                           agtACCTGGGGACGCATAACAGCTTCTGTGCACAGGACCTTTCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                             <  2:157654/141‑1 (MQ=255)                                                                              aCCTGGGGACGCATAATAGCTTCTGCGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg                                                          <  1:323183/143‑1 (MQ=255)                                                                               ccTGGTGACGCATAAGAGCTTCTGTTCAGAGGTCCTTGCCGAGTTACTAGGCGCAACGCTAATCTGATCGTACCCAGCAATAGTGGACACGCTCCTAAGTGAGTTAACTCTCAGTCAGTGGTGACTCACATGACAAAAACAga                                                         <  2:948544/143‑2 (MQ=17)                                                                               ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAGACAGt                                                         <  2:941105/143‑1 (MQ=255)                                                                               ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGAACAAGTAAATAAACTATAAATAAGAGATAAATCACAAGACAAAAACAGt                                                         >  1:573621/1‑143 (MQ=25)                                                                                     gACGCAGCAGAGCATCCGTGCCCAGGACGTTGCCGCGGTAACCGGCGCCACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                   <  1:255514/143‑1 (MQ=17)                                                                                          acaaGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGAAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                              <  2:798522/141‑1 (MQ=255)                                                                                          aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCGCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACCAGTa                                              >  1:210736/1‑143 (MQ=255)                                                                                             agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCCTACCCAGCCATAGTCAACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTcaaa                                           >  1:211634/1‑143 (MQ=21)                                                                                                   tCTGAGCGCAGGACGGGGCCGCGGGAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAGGCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc                                     <  1:74074/143‑1 (MQ=17)                                                                                                    cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACTCCCATGACCACAACAGTATCAACGGGTAAAACACCCCg                                    >  1:850185/1‑143 (MQ=18)                                                                                                          acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAGCTTACCGAGCAATAGTGGACACGCGGCTAAGTGAGTAAACGCTCGGTCAGAGGTGAGTCACATGACACAAACAGAATCAAACAGTAAAAAACCACGCAAACa                              >  2:162876/1‑143 (MQ=17)                                                                                                            aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAACCCATAAAAAga                            >  2:329949/1‑142 (MQ=255)                                                                                                             ggatgctGCCGCTGCAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAATCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                           <  2:193627/137‑1 (MQ=14)                                                                                                                   cgCCGCGGTAACAGGCGCAACCGTAATCTGACCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTGAACTCTCAGTCAGCGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                     <  1:1128692/142‑1 (MQ=255)                                                                                                                     ccGCGGTAGCAGGCGCCACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg                   <  1:853999/143‑1 (MQ=255)                                                                                                                      cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTACACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa                  >  1:34811/1‑143 (MQ=255)                                                                                                                      cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAGTCTTCGGCATAGGTGACTCGGATGTCTAATACAGTATCAACCAGTAAAAAACCGCGTAAACAGCATTCGCCTGa                  >  2:801486/1‑143 (MQ=14)                                                                                                                      cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCCGTCAGAGGTGACTCACATGCCAAAAACAGTATCAACCAGTAAAAGCCCCCGTACACAGCCCTCGCCCGa                  >  1:784024/1‑143 (MQ=14)                                                                                                                       tcgGTAACATGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa                 <  1:270269/142‑1 (MQ=255)                                                                                                                          gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAttt              <  1:85083/143‑1 (MQ=255)                                                                                                                            agcAGGCGCAACCGTAATCTGATCTTACCCAGCAATTGTATTTACTTGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg            <  2:496722/141‑1 (MQ=14)                                                                                                                            accAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg            <  1:106498/141‑1 (MQ=38)                                                                                                                            aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg            <  2:915348/143‑1 (MQ=40)                                                                                                                             aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCGGTACACAACCCCGTAAACAGCATCCGCCTGAATTTCGc           >  1:877828/1‑143 (MQ=255)                                                                                                                             aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc           >  2:759230/1‑143 (MQ=39)                                                                                                                               aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGACAGAGGTGAGTCACATGACAAAAACAGTATCAACCAGTAAAAAAACGCGTACAAAGCATTCGCCTGAATATCGCAg         >  2:787920/1‑143 (MQ=11)                                                                                                                                     aagggttaTCTGTTCTTATCCAGTAATAGTGGACAAGGGGCGAAGTGAGTAAACCCTCGGTCAGAGGTGCCTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc   <  1:295767/136‑1 (MQ=1)                                                                                                                                      gtggtgaTCTGATCTTACCCAGCACTAGTGTACACGCGCCTGAGTTAGAAAACTGTCAGTCAGAGGTGACCCACATGACTAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc  <  2:974815/137‑1 (MQ=1)                                                                                                                                               |                                                                                                                                      CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCC  >  NC_000913/566635‑566910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.