| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1421002 = | 49 (0.860) | 4 (0.070) | 4/258 | NT | 6.3% | coding (319/423 nt) | ydaT | Rac prophage; protein YdaT |
| ? | NC_000913 | = 1446373 | 71 (1.270) | intergenic (+167/+5) | ydbL/feaR | DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR | |||||
GAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAA > NC_000913/1420860‑1421140 | cgctacaggagaaggcgattgatctattttcctgaaacaaggtgaatattcaaaaactcctgtcaaattgccttttgccctgaaaaatgcatagtcaaatatctgttttaactaattggcgttgcagtacatgcaacgcgaat < 2:66503‑M1/1‑1 (MQ=255)cgccacaggagaaggcgattgatctattctcctgaaacaaggtgaatattcaaaatctcctgtcaaattgccttttgccctgaaaaatgcatagtcaaatatctgttttaactaattggcgttgcagtacatgcaacgccaat > 1:165873‑M1/143‑143 (MQ=255) gctacaggagaaggcgattgatctattttcctgaaacaaggtgaatattcaaaaactcctgtcaaattcccttttgccctgaaaaatgcatagtcaaatatctgttttaactaattggcgatgcagtacatgcaacgccaatt < 2:1090012‑M1/2‑1 (MQ=255) ggTGAAACGAAACCGCAAAGCGAAAAAATTCAGAAGCTGATCTCAGCAATTCTGGCTATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTTGAACGCCGTGCATTACTGGCGGCGCAGGACGCGTTAAg < 2:141811/143‑1 (MQ=255) aaaaCGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAAt > 2:289698/1‑143 (MQ=255) gaaCGGAAAGAGAAAAAATTCGGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAAtt < 1:352424/142‑1 (MQ=255) cAAAGAGAGAAAATTCCGAGGCTGATCCCAGCAATGCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACCCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATgc < 2:347649/143‑1 (MQ=255) gaAAAACTCCGGCAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCatga < 2:240077/143‑1 (MQ=255) ttttcctgaaacaaggtgaatattcaaaaactcctgtcaaattgccttttgccctgaaaaatgcatagtcaaatatctgttttaactaattggcgttgcagtacatgcaacgccaaTTAAGTACGCCAATTGATGCGCatgat < 2:326998‑M1/27‑1 (MQ=255) aaaaaaTTCAGAAGCGGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGTCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCCAGTGATGCGCatgat > 2:143192/1‑143 (MQ=255) aacctCAGAATCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCatgatgat < 1:1111709/139‑1 (MQ=255) aaaTTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGGGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCatgatgat < 1:280044/143‑1 (MQ=255) aaaTTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGCTACCCTGGAACGCCGTGCATTACTGGCGGCGCCGGCAGCGTTAAGTACGGCACTTGATGCGCatgatgcg > 1:313677/1‑141 (MQ=255) aTTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGc > 1:746840/1‑143 (MQ=255) gaggCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTGCGATACCCTGGAACGCCGTGCATTACTGGCGAAGAAGGGATCCGTGAGTACTTCAATTGATGCGCATGATGATGCAGTcc < 1:478941/140‑1 (MQ=255) ccgcggATCCCAGCAATTCTGGCAATCCGTCCGCGCGAGCGGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCa < 2:713919/138‑1 (MQ=255) cTGATCCCAGCAATTCTGGCAATCCTTCCGCGCTAGCGGCGTCACCTACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGc < 2:721738/143‑1 (MQ=255) aTCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTCCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGAGGCAGGCCAAGCCGt > 1:529222/1‑143 (MQ=255) ccAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGCCGGCGCAGGAAGCGTTAAGTACGGCAATCGATGCGCAGGATGGTGCAGTCCAAGCCGCTTa > 2:1049899/1‑143 (MQ=255) aGCTATTCTGTCAATCCTTCCTCGCTATGTGCGTCATCGACTCTGCATCTTCGATACTCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTAcc < 2:857588/143‑1 (MQ=255) aGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATCGATGCGCATGATGATGCAGTCCAAGCCGTTTccc > 1:98461/1‑143 (MQ=255) cTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGCTGATGCAGTCCAAGCCGTTTACCGGAAAgc > 1:531164/1‑143 (MQ=255) ggCACTCCTTCGGCGCGAGCTGCGTCACCGTCTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAgcgc < 1:522101/143‑1 (MQ=255) gctaTCCTTCCGCGCGACCTGCGTCACCCACTCTGCATCTTCGATCCCCTCGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCa < 1:870304/140‑1 (MQ=255) aTCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCGTTACTGGCCGCGCAGGCAGCGCTGAGTACGGCAACTGCGGCGCATGCTGATGCCGTCCAAGCCGCTTACCGGAGAGCGCaggt > 1:313376/1‑140 (MQ=255) ccGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAgcgg < 1:866548/143‑1 (MQ=255) tcgctAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAgcggcg < 1:945593/142‑1 (MQ=255) gcgAGCCGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAgcggcggc < 1:230998/143‑1 (MQ=255) aGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGt < 1:1020974/143‑1 (MQ=255) tgccctgaaaaatgcatagtcaaatatctgttttaactaattggcgttgtagtacatgcaacgccaaTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGtt > 1:1121982‑M1/68‑143 (MQ=255) ccctgaaaaatgcatagtcaaatatctgttttaactaattggcgttgcagtacatgcaacgccaaTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGttct < 1:1109110‑M1/78‑1 (MQ=255) ctctGCCTCTTCGATACGCTGGAACGCGTTGTATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTc < 2:313677/143‑1 (MQ=255) aTCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCCCAGGAACCGTTAAGTACGGCAATTGCTGCGCATGCTGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGAGGTTCTTCCCACCAATCTGTCAt > 2:443007/1‑143 (MQ=255) tCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGAGTCTGTCAtt > 1:768598/1‑143 (MQ=255) ttCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGCTCTTCCGACCACTCCGTCATTGt > 2:432757/1‑143 (MQ=255) gtgccccTGACACGCCGTGTGTTACGGGCGGCGCAGGAAGCGTTAAGTGCGGCAATTGATGCGCATGATGATGCAGTCCACGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCa < 2:537957/139‑1 (MQ=255) tctgttttaactaattggtgttgcagtacatgctacgccaaTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCAt > 2:61509‑M1/42‑143 (MQ=255) tACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCAtt < 1:289698/143‑1 (MQ=255) cccTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTaa < 1:40314/143‑1 (MQ=255) ccTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCCTTATGTTCGGCGGTTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGTCGGTTCTGTCGTTGTTCATTGAg > 2:618796/1‑143 (MQ=255) cGCCGTGCATTACTGGCGGGGCAGGAAGCGTTAAGTACGGCAATTGATGGGCATGATGATGCAGGCCAAGCCGGTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGAATCTGTCATTGTTCATTAAGCGAAAgg > 2:72466/1‑142 (MQ=255) ccGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGGCATTGTTCCTTACGCAAAACttt > 2:402843/1‑143 (MQ=255) aTTACTCGTGGCTCATGAAGCGTTAAGTACGGCAAGTGATGAGCGTGCTTATGCAGTCCACGCCGGTTACCGGAAAGCGGATTTCGACGTAGGCGGTGCGTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGc < 2:182788/143‑1 (MQ=255) ttACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAACGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCTTTAAGCAAAAGTTTCCATGCt > 2:176120/1‑143 (MQ=255) ttACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACAGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGCCGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATTCt > 1:241993/1‑143 (MQ=255) tACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTGTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTGATGGTTCATTAAGCAAAGGGTTCCATGCTg > 2:538518/1‑143 (MQ=255) aCTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCtct > 1:793864/1‑141 (MQ=255) gcggcgCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAGGCAAAAGTTTCCATGCTGTTtgt > 1:1121022/1‑143 (MQ=255) cggcgCAGGCAGCGTTAACTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTtgtg < 1:706817/143‑1 (MQ=255) cggcgCAGGAAGCGTTAAGTACGGCAAGTGATGCGCATGATGAGGCAGTCCAAGCCGGTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTtgtg < 1:57182/143‑1 (MQ=255) ggcgCGGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTTGTGc < 2:702069/143‑1 (MQ=255) ggcgCCGGACGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAACAGTTTCCATGCTGTTTGTGc < 1:143192/143‑1 (MQ=255) ggcgCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTAATTAAGCAAAAGTTTCCATGCTGTTTGAGc > 2:615737/1‑143 (MQ=255) gcgcAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCCGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCACAAGTTTCCATGCTGTTTGTGCt > 2:1067017/1‑143 (MQ=255) gcAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGGTCCTGTCATTGTTCCTTAAGCCATCGTTTCCATCCTGTTTGTGATTa > 1:1011220/1‑143 (MQ=255) gcAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTATGCCGGAGACCGAATTCCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTCCATTAAGCAAAAGTTTCAATGCTGTTTGTGCTTa > 2:399205/1‑143 (MQ=255) ggAAGCGTTACGTACGGCCATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGACAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTc < 1:556305/143‑1 (MQ=255) aGCGTTAAGTACGGCAATTGATGCGCATGATGGGGCGGTCCAAGTCGTTTACCGGAAAGCGCATTTCAGTGGCGGCGGTTCTTCCGACGATTGTGTCATTGTTCATGAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTaa < 2:1017628/143‑1 (MQ=255) aGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTaa < 2:700328/143‑1 (MQ=255) aGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTaa < 2:153463/143‑1 (MQ=255) | GAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCTGCGTCACCGACTCTGCATCTTCGATACCCTGGAACGCCGTGCATTACTGGCGGCGCAGGAAGCGTTAAGTACGGCAATTGATGCGCATGATGATGCAGTCCAAGCCGTTTACCGGAAAGCGCATTTCAGCGGCGGCGGTTCTTCCGACGATTCTGTCATTGTTCATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAA > NC_000913/1420860‑1421140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |