| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 58 (1.010) | 14 (0.330) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
9/196 | NT | 31.0% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 26 (0.450) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
TCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170094‑2170376 | tCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:828739/1‑143 (MQ=255) gcggTGATATTGTTGGCGGTCAATCAGCCTGCGCCGATAAGCATTGTCGTACTTCCGCCGTCCAGAAGAACGGGCTGATCTTACCCCGCAATGGTGGACACGCGGCTAACTGAGTAAACTCTCAGTCAGAGGTGACTcacacg < 2:247429/140‑3 (MQ=18) cGTGATATTTTTGGCGGTCCTTAATCCTTCGGCGATAAGCCTTGTCGGACTTGCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACttagc > 1:96115‑M2/1‑138 (MQ=255) cGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:180210/1‑143 (MQ=255) tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 1:543787/143‑1 (MQ=255) atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCGATAGTGGACACGCGGCTAAGTGAGTAAACTGTCACTCAGAGGAGAACCACAAAACaaaaaa > 1:448661/1‑142 (MQ=25) tttctGGCGGTCACTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa < 1:352934/143‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 2:707807/143‑1 (MQ=255) ggTCATTACGCGTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAGTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 2:486297/143‑1 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 2:828739/143‑1 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg < 1:795484/143‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCCCATGACAAAAACAGTATCAACCAga > 2:226629/1‑142 (MQ=255) ttgaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAAGAACGGTCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa < 1:494178/140‑1 (MQ=255) ttACTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGCCCGAGGTGGCTCACCTGACAAAGACAGTATCACCCAGTa > 1:86690/1‑143 (MQ=21) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 2:212434/1‑143 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAACAGTGGACCCGCGGCTAAGTGAGTACACTCTCAGTCAGAGGCGACTCACATGACAAAAACAGTATCAACCAGTaaaa > 2:487429/1‑143 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGAGAGGACGCTAAGATGGTGCTTGCACAATCCGGGGTGACTCACATGACAGAAACAGTATCAACCAGTAAAacacac > 2:1102198/1‑141 (MQ=16) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAGCGATCTGATCTTACCCAGCAATAGTCGACACGCGGCTAAGTGAGAAAACTCTCAGTCAGAGGTGACTCACATGCCAAAAGCAGTATCAACCAGTAAAAAACCCCGTAAAc > 1:215932/1‑143 (MQ=17) aGCATTGGCGTACTTGCGCTGTCGAGAATAACGGTCTGATCTGACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg < 1:428673/143‑1 (MQ=255) aTTGTCGTACTTCCGCTGTAGAGAAGGAAGGACTGATCTTACCCAGCAATAGTGGACCCGCGGCTAAGTGAGCAACCGCGCAGTCAGAGGCGACTCACAAGACCAAAACAGTATCAACCAGAAAAAAAACCCGAAAAAAGCAt > 2:1079624/1‑143 (MQ=14) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTAAGCAAAATATCAAGCAGAGGTGAATAGAAATACAAAAACAGTATCAACCAGTAAAAAACCACGTAAACAGCGTTCGc > 1:474503/1‑143 (MQ=17) cTTCGGCTGTCGAGGATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATCACCAGTACTTTACCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa < 2:242503/143‑1 (MQ=14) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAt > 1:556235/1‑143 (MQ=255) tggggagaATGAGGGTCTGGTCTTACCCAGCAATAGTGGACACGCGGCTAAGCGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 1:19593/139‑1 (MQ=11) agaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGCGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATCTCGCAGTGaa > 2:517593/1‑143 (MQ=255) aaTAACGGTCTGATCTTCCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc < 1:376745/143‑1 (MQ=25) aTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc > 1:956384/1‑143 (MQ=35) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATATCGCAGTGAAGccc > 2:514011/1‑143 (MQ=21) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCACTCGCCGGAATTTCGCAGTGAAGCCCTGa > 2:430947/1‑143 (MQ=12) ggTCTGATCTTACCCAGCAATAGTGGACACGCGACTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGCATTTCGCAGTGAAGCTCTGac > 1:123521/1‑142 (MQ=9) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcattgctgcgtctgtgaa < 1:356240‑M2/143‑107 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtcacgg < 1:870730‑M2/143‑109 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcctcccctccgcagaggtcaaacgctagatgcaaagaattgccggtgcatttctgcatctgtgaagg < 1:248248‑M2/143‑109 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacacttcccctccgcagaggtcaaacgctagatgcaaagactcgcatgtgcatctccgaatctgtgaagg < 2:811864‑M2/143‑109 (MQ=255) cTAAGTGAGTAAACTCTAAGTCAGAGGTGACTCACttagccgcgtgtccactattgatgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgccagtgcatctctgcatcactgaagg < 2:192675‑M2/143‑109 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtggatttctgcattggtgaagtgagaa < 1:895396‑M2/143‑114 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactagtgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcctttctggatatgggaagggagaa < 2:870595‑M2/143‑114 (MQ=255) gAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagcag < 1:572726‑M2/143‑115 (MQ=255) gAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagagg < 2:479232‑M2/143‑115 (MQ=255) aaCTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggt > 1:68813‑M2/1‑24 (MQ=255) aaCTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggt < 2:68813‑M2/111‑88 (MQ=255) tgagaggtGTCTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtgtggattgt > 1:10985‑M2/3‑15 (MQ=255) ggttgacTCGCttagccgcgtgtccactatggctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgt > 2:52792‑M2/4‑11 (MQ=255) tGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcg > 2:853083‑M2/1‑8 (MQ=255) cTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggatcgtatgtgagctt < 2:120079‑M2/143‑139 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggcttgtatgtgcgcgta < 1:712217‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgcagggggcagagcgtttggtttgtttgttcgcgtata < 1:380663‑M2/143‑142 (MQ=255) aCttagccgcgtgtcaactattgctgggtaagatcagttcacgcttcccctccgcagaggtcacacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagaatatggaaagtatttgcgcgtaga < 2:114348‑M2/143‑142 (MQ=255) | TCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170094‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |