New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4343130 =49 (0.860)3 (0.050) 3/252 NT 6.0% coding (1220/1356 nt) melA alpha‑galactosidase
?NC_000913 4343158 = 48 (0.880)coding (1248/1356 nt) melA alpha‑galactosidase

TGCTAATGGCATTCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTGCGCCGGGGGATTTA  >  NC_000913/4343017‑4343300
                                                                                                                                             |                                                                                                                                              
cgttaaaacggtgcaaccagcctggcagccagtcgccgtgggcggcaatcaggtcgtcaacaagagcatatatttcgtcaatgcccagcacggcggcagtatgcgggtccatcATCGCGTCCGTGTTTACCACGCCGCgatga                                                                                                                                               >  1:312758‑M1/114‑143 (MQ=255)
 gctgagcgCATTCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCgatgat                                                                                                                                              <  1:251365/136‑1 (MQ=255)
  cTAATGGCATTCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGatgatg                                                                                                                                             >  1:1019170/1‑143 (MQ=255)
      tGGCATTCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACCGCCGCTGCTGACCGACGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGAcc                                                                                                                                         >  1:1126316/1‑143 (MQ=255)
       ggCATTCAGCCGATCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGAccc                                                                                                                                        <  2:169127/143‑1 (MQ=255)
       ggCATTCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGAccc                                                                                                                                        <  1:837129/143‑1 (MQ=255)
       ggCAGTGAGCCGACCAATGTCGGTACGCTACTTTCGCATCTGGCGGCCCTGATGCAAACCAACATCAACGTTCAGACGCTGCTGACCGCAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGAccc                                                                                                                                        <  1:629197/143‑1 (MQ=255)
           ttCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCAt                                                                                                                                    >  1:479996/1‑143 (MQ=255)
                ccGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACACCAACGTACAGCCGCTGCTGACCGAAGCCATTCTTACGGAAAATCGCGACCGTGTTTACCACCCCGCGATGATGAACTCGCATCCTgc                                                                                                                               >  2:673235/1‑143 (MQ=255)
                  gACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTgccg                                                                                                                             <  1:744035/143‑1 (MQ=255)
                          tCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTCTTCTTACGGAAAATCGCGACAGTGTTTACCACGCCACGATGATGGACCCGCATACTGCCGCCGTGCTg                                                                                                                     >  1:837047/1‑143 (MQ=255)
                                cGCTACCATCGCAACTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCAtt                                                                                                               <  1:147828/143‑1 (MQ=255)
                                  ccaCCGTCGCAGGTGGCCGCCCTGAAGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATGCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGa                                                                                                             <  2:1028623/141‑1 (MQ=255)
                                           cATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAatata                                                                                                    <  1:125144/143‑1 (MQ=255)
                                                 gccgccCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTGTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTACTGGGGATTGACGAAATATATGctct                                                                                              <  2:991584/143‑1 (MQ=255)
                                                      ccTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGACGATCGACACGCATACTGCCGCCGCCCTGCGCCTTGACGGCACAGACGCTCttgtta                                                                                         >  2:200928/1‑142 (MQ=255)
                                                        tGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGGCGAAATATATGCTCTTGTTgac                                                                                       >  1:209492/1‑143 (MQ=255)
                                                        tGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTgac                                                                                       <  1:723154/143‑1 (MQ=255)
                                                        tGAGGCAAACCAACAGCAAGCTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTgac                                                                                       <  1:579319/143‑1 (MQ=255)
                                                             cAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTAGTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCt                                                                                  <  1:179969/143‑1 (MQ=255)
                                                               aaCCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGCCCtca                                                                                >  1:736378/1‑141 (MQ=255)
                                                                tccaccaTCAACATACAGACCCTGCTGACCGAAGCTATTCGTACGGAAAATCGCGACCGTGTTTACCCCGCCGCGTTTATGGACCCGCATACTTCCGCCGTGCTGGGCATTGGCGAAATATATGCTCTTGTTGAAGACCTGAt                                                                               <  2:267011/142‑1 (MQ=255)
                                                                aCCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGTATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGAt                                                                               >  1:1011152/1‑143 (MQ=255)
                                                                aCCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTGTACCACGCCGCGATGATGGACCCGCATACTGCCGCCCTGCTGGGCATTCACGAAATATCTGCTCTTGGTGGCGACCTGac                                                                               >  2:840352/1‑142 (MQ=255)
                                                                  cgaCATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTg                                                                             <  1:7785/141‑1 (MQ=255)
                                                                  cAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCCGATTg                                                                             >  1:955082/1‑143 (MQ=255)
                                                                  cAACATCAACGTACAGACGCTGCTGACCGAAGCGATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATAATGGACCCGCATACTTCCGCCGGACTGCGCATTGACGAAATGTATGCTCTTGTGGACGACCTGATTg                                                                             >  1:428744/1‑143 (MQ=255)
                                                                       tCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTgccgcc                                                                        >  1:334942/1‑143 (MQ=255)
                                                                           cGTACAGACGCTGCTGACGGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACg                                                                    <  2:36905/143‑1 (MQ=255)
                                                                                            ccGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATAGACCCGCATACTGCCGCAGTGCTGGGCATTGACGAAATAAATGCTCTTGTTGACGACCTGATTGCCGCACACGGCGAATAGCTGCAAGGc                                                   >  2:14020/1‑143 (MQ=255)
                                                                                              gAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGGCGGGCGGCCAGGccg                                                 >  2:568842/1‑141 (MQ=255)
                                                                                                agtcaTTCTTACGGAAAAGCGCGACCGCGCTCACCACGCCCCGATGATGGACCCGCATGCTGCCGCCGTTCTGGGCATTGACGAACTATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGt                                               <  2:684818/139‑1 (MQ=255)
                                                                                                 gcgaTTCGTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGtt                                              <  1:962011/140‑1 (MQ=255)
                                                                                                 gCTATTCTTACGGACAATCGCGCCCGTGTTTACCAGGCCGCGATGGTGGACCCGCATACTGCCGCCGTCCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGtt                                              <  2:1117438/143‑1 (MQ=255)
                                                                                                    aTTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGATCTGATTGCCGCCCACGGCGACTGGCTGCCCGGCTGGTTGCa                                           >  1:556537/1‑143 (MQ=255)
                                                                                                    aTTCTGACGGAAAACCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCCTACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCa                                           <  1:1042886/143‑1 (MQ=255)
                                                                                                          aCGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCGACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTa                                     >  1:91031/1‑143 (MQ=255)
                                                                                                             gAAAATCGCGACCGTGTTTACCACGCCGCGATGAGGGACCCGCATACGGGCGACGTGCTGGGCCTGGACGAAATATATGCTCTTGTTGACGCCCTAGTTGGCGCCCACAGCGACTGGCTGCCAGGCTGGTTCCACCCATaaag                                  >  2:1124120/1‑142 (MQ=255)
                                                                                                             gAAAATCGCCACCGTGTTCACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGACATATATGCTCTTGTGGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTaaaa                                  <  1:191439/143‑1 (MQ=255)
                                                                                                              aaaaTCGCGTCCGTGTTTACCTCGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGTATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAAc                                 <  2:102487/143‑1 (MQ=255)
                                                                                                               tcatcgcggcgtggtaaacacggacgcgatGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTTTAAcg                                >  1:312758‑M2/31‑143 (MQ=255)
                                                                                                               aaaTCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCGCCGTGAAAAcg                                >  2:167088/1‑143 (MQ=255)
                                                                                                                  cCGCGACCGTGTTTACCGCCCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGa                             >  1:970846‑M1/2‑143 (MQ=255)
                                                                                                                  cCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATCGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGa                             >  1:1022231‑M1/2‑143 (MQ=255)
                                                                                                                  TCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGCTTGCCGCCCACGGCCACTGGCTGCCAGGCTGGTTGCACCGTTAAAGCGCGa                             <  1:1090485‑M1/143‑1 (MQ=255)
                                                                                                                     CGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGCTAAAACGCGACTa                          <  2:696542‑M1/143‑1 (MQ=255)
                                                                                                                       gccGTGTTTACCACGCCGCGGTGATGGACCCGCATACTGCCGGCGTGCTGGGCATTGACGAAATAGATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGGCTGGTTGACACGCATATTGCACCGTTAAAACGCGACTaaa                        <  2:809919/142‑1 (MQ=255)
                                                                                                                        cgtggtaaacacggtcgcgatGATGGACCCGCATACTGCCGCCGTGCTGGGCATTg                                                                                                              >  1:474366‑M2/22‑56 (MQ=255)
                                                                                                                        cgtggtaaacacggtcgcgatGATGGACCCGCATACTGCCGCCGTGCTGGGCATTg                                                                                                              <  2:474366‑M2/35‑1 (MQ=255)
                                                                                                                         cGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACg                      >  1:150180/1‑143 (MQ=255)
                                                                                                                           tgtTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCt                    >  1:736478/1‑143 (MQ=255)
                                                                                                                            gtTTACCACGCCGCGATGATGGACACGCATACTGCCGCCGTGCTGGGCATTGACGAGATATATGCTCTTGTTGACGACCTGGTTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTGAAACGCGACTAAGCGCTa                   >  2:698513/1‑143 (MQ=255)
                                                                                                                             tttACCCCGCCGCGTGGATGGTCCCGCATACTGCGGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTAc                  <  2:584201/143‑1 (MQ=255)
                                                                                                                             tttACCACGCCGCGATGATGGACCCGCATACTGTCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTAc                  <  2:583926/143‑1 (MQ=255)
                                                                                                                             tttACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTCAAACGCGACTAAACGCTAc                  >  1:1051711/1‑143 (MQ=255)
                                                                                                                               tACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTGTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTg                >  1:475678/1‑143 (MQ=255)
                                                                                                                                accaccCCGCGAACATGGACCCGCAGACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTGGACCACCTTATTGCCGCCCACTGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTgc               <  1:103230/143‑1 (MQ=255)
                                                                                                                                 ccACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTgcg              >  1:575832/1‑143 (MQ=255)
                                                                                                                                   aCGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTGTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGGTGCTCCGGTGGGGCGCGACCGAGCGCTCCTGCGcc            >  1:328536/1‑143 (MQ=255)
                                                                                                                                       cgcgatGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTCAGACGCGACTACACGCTACTGCGctggcg        >  2:382835‑M2/7‑141 (MQ=255)
                                                                                                                                          gatGATGGACCCTCTTACTGCCGCCGTGCTGTGCATTGACGAAATATATGCTCTTGTTGACGACCGGAGTGCCGCCGACGGCGACTTGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTGCGCCGGGGGAt     <  2:489612‑M2/140‑1 (MQ=255)
                                                                                                                                             gatgGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTGCGCCGGGGGATTTa  <  1:1086535/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TGCTAATGGCATTCAGCCGACCAAAGTCGGTACGCTACCTTCGCATCTGGCCGCCCTGATGCAAACCAACATCAACGTACAGACGCTGCTGACCGAAGCTATTCTTACGGAAAATCGCGACCGTGTTTACCACGCCGCGATGATGGACCCGCATACTGCCGCCGTGCTGGGCATTGACGAAATATATGCTCTTGTTGACGACCTGATTGCCGCCCACGGCGACTGGCTGCCAGGCTGGTTGCACCGTTAAAACGCGACTAAACGCTACTGCGCCGGGGGATTTA  >  NC_000913/4343017‑4343300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.