Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1196228	1211481	15254	35 [34]	[34] 35	[icd]–[icdC]	[icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC]

CTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTG  >  NC_000913/1211410‑1211624                                                                         |                                                                                                                                               aggaggctgcGCCAGATGCGTTGCGCCGAAGCGGCTGCCCTCAATGTGAAAGCTATGGAAGGCGCAATCGCTGCAAAGACCGTAATATATGTCTTCGATCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTgg                                                                          <  2:874303/138‑1 (MQ=9)      gctgcGCCATATGGGTTGAAATAACGGTGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCAAAGACCGTAACTTATGACTTCGAACGTCTGATGGCATGCGCTAACCTGCTGAAATGTTCAGAGTCTGGTGAAg                                                                     >  2:894346/1‑143 (MQ=17)         gcgcCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACATCGAACGAAAGCTGGGAGGCGCTCAGCTGCTGCATTGTTCAGAGTTTGGTGAAGCgc                                                                  >  1:198726/1‑142 (MQ=18)            ccATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACGTCGAACGTATGATGGCAGGCGCTAAGCTGCTGAAATGTTCAGAGTGTGATGAAGCggtaa                                                               >  1:1304118/1‑139 (MQ=18)              atatGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGatcatc                                                             >  2:318897/1‑143 (MQ=255)              atatGCGTTGGCCTGAAGCCGCTGCCCTGATTGCTAAAGGTATGGAAGGCGCAATCCATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGatcatc                                                             <  1:216258/143‑1 (MQ=18)                 tGGGTTGGACTGAAGCTGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGaa                                                          <  2:1329862/143‑1 (MQ=255)                    gTTGGACTGAGGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAAc                                                       <  2:1466977/143‑1 (MQ=255)                      tGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACAt                                                     <  1:486174/143‑1 (MQ=255)                          cTGAAGCGGCTGACCTTATTGTTAAAGGTAGGGAAGGCGCAATCAAGGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTaa                                                 <  1:1271493/143‑1 (MQ=255)                           tGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAt                                                >  1:1116953/1‑143 (MQ=255)                           tGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAt                                                <  2:884061/143‑1 (MQ=255)                               gCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAtctct                                            >  2:5399/1‑143 (MQ=255)                                       ccTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATgtgt                                    >  1:474452/1‑143 (MQ=255)                                          gATTGTGAACGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTaa                                 <  1:424902/143‑1 (MQ=255)                                           aTTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAt                                                <  1:213940/127‑1 (MQ=255)                                           aTTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAt                                                >  2:213940/1‑127 (MQ=255)                                              gTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAatat                             >  1:950640/1‑143 (MQ=255)                                                 aaaGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATGTCTCCATGTGTTAAATATTGa                          >  1:454251/1‑143 (MQ=255)                                                  aaGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGCGGTTGGTGAAGCGATCAGCGAACACATGTCATCACTCCATATGTTAAAGAttacc                         >  2:231395/1‑140 (MQ=18)                                                   acgTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTACATATTgtca                        <  2:1407171/141‑4 (MQ=255)                                                   aGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTACAGAGGTTGGTTAAGAGATCATCGAAGACACGTAGTATCTACAAGTGTTGATTATTGgaa                        >  2:1027029/1‑143 (MQ=17)                                                    ggTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTCAATATTGAAAc                       >  1:349233/1‑143 (MQ=255)                                                     gTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTATCCATGTGTTAAATATTGAAACg                      >  2:1212067/1‑143 (MQ=255)                                                       aTGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAGTCTCTACATGTGTTAACTATTGGAACggg                    >  1:315565/1‑143 (MQ=255)                                                       aTGGAAGGCGCAATCAAGGCCAAGACCGTAACTGATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACggg                    <  1:108773/143‑1 (MQ=255)                                                       aTGGAAAGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACggg                    <  2:1314160/143‑1 (MQ=255)                                                        tGGAACGCGCAATCCAGGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGc                   <  1:171724/143‑1 (MQ=255)                                                        aggAAGGCGCAATCATTGCCAAGACCGTAACTTATGACCTCCAACGTCTGATGGAAGGCGCTACGCTGCTGAAATGTTCACAGTTTGGTGAAGCTATCATCGAAATCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGc                   <  1:512505/142‑1 (MQ=255)                                                           aaGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACATCTGATGCAAGGCGCTAAGCTGCTGAACCGTTCACAGCTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCCTGTGTTCCATATTCCAACGCGCGta                >  2:446685/1‑143 (MQ=18)                                                              gcgcAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTACATATTGAAACGAGCGTATaa             >  2:112469/1‑143 (MQ=255)                                                               cgcAGTGAATGCGAAGACCGTAACTTGTGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAac            <  2:415532/143‑1 (MQ=255)                                                                gcAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGCGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAACTATTGAAACGGGCGTATAaca           >  2:406127/1‑143 (MQ=255)                                                                gcAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGCGCGTATAgca           >  2:482908/1‑143 (MQ=255)                                                                         gCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgttt  <  1:897123/143‑2 (MQ=255)                                                                         |                                                                                                                                               CTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTG  >  NC_000913/1211410‑1211624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑