| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 96.4% | 133.6 / NA | 55 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (26/27); minor base A (0/2); total (26/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
CGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGC > NC_000913/2367970‑2368234 | cGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTTCATCCAGCAAGGAAAATGAATAATGAAATTCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGa < 1:894934/143‑1 (MQ=255)cGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGa > 2:78281/1‑143 (MQ=255)cGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATACGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATCTGGAATGCCTCGATATTGAAGCCCTGCTGCACGCCGGTTACGa > 2:271786/1‑143 (MQ=255) aTGTCCGCGCCCGCCCCCTCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGTAAAATGAATAATTAAATCCGTTGTTTTTTTCTATCACGATATGGGATGACTAGGTATTGAAGCCCTGCTGGCCGCCGGTTACGaaa < 1:344703/143‑1 (MQ=255) cgcccgccCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGACGCCCTGCTGGCCGCCGGTTACGAAATTAgcgc > 1:9333/1‑143 (MQ=255) ccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATCAAAACCGTCGTTTTTGCCCACCACGATATGGGATGCCTCGTTATTCAAGCCCAGATCGCCGCCGGATGCGACATGAGCGCCac > 2:793614/1‑142 (MQ=255) ccGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAc < 2:1148631/143‑1 (MQ=255) ccGCTATTTTGCTCAGCGAGTTCTCCGTCCATCAAGCTAGGGAAATTGACAATGATCACTGTAGTGCTAGCCTAGCACGATATGGGATGCCTCGGTATTGCTTCCCCGGTGGCCGCCGGTTTCGTAATTAGCGCCATTTTTAc < 2:1114171/143‑1 (MQ=255) cGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAcc > 1:1220764/1‑143 (MQ=255) cGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAcc > 2:1152855/1‑143 (MQ=255) cGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAcc < 1:920470/143‑1 (MQ=255) tcTATTTTGTTCAGCAAGTTATCCGTCGATTCAGCAAGGAAAATGAATAATGAAAGCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGTCGTCGGTTACGAAATTAGCGCCATTTTTAccc < 2:525253/142‑1 (MQ=255) tATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTCTTGAAGCCCTGCTGGCCGCCGGATACGACATCAGCGCCATTTTTACCCAt > 2:1076274/1‑143 (MQ=255) tGTTCGGCAAGTTATCCGTCCATCCAGCAAGGAAAATGATTAATTAAACCCGTCGTTTTTGTTTATCTTGTTATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGa < 1:467127/143‑1 (MQ=255) ttCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTCACGAAATTAGCGCCATTTTTACCCATACTGATa > 2:1066823/1‑143 (MQ=255) tCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAACCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATaa < 1:78281/143‑1 (MQ=255) cAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGACAACCGTCGTTTTTGCCTACCACGATATTGGATGCCTTTGTATTGAAGTCCTGCTGGCCGCCGGTTACGAAAGTAGCGCCATTTTTACCCATACTGATAAt < 1:929840/143‑1 (MQ=255) ggaaGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATcc > 1:884176/3‑143 (MQ=255) ctatgtATCCTCCCATCCATCAAGGAAAATTAATACTGAACACCGTCGTTTTTGCCTACCACGATATGTGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATccc < 1:1332351/138‑1 (MQ=255) gTTATCCGTCCATTCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGt < 1:1122440/143‑1 (MQ=255) gTTATCCGTCCATCCAGCAAGGAAAATGACTAATGAAAACCGTCGTTTTTGCCTACCACGATATTGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGt < 1:1403185/143‑1 (MQ=255) accatcgatccaGCAAGGAAAATGAATAATGAAAACCGCCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAATACCTGCTTGAAGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaa < 1:136247/136‑1 (MQ=255) ccGTCCATCCAGCAAGGACAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaa < 1:1363848/143‑1 (MQ=255) gTCCATCCAGCAAGGAAAATGAATAATAAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAAGTAGCGCCATTTTTACCCATACTGCTAATCCCGATCAGAAAg > 2:215147/1‑143 (MQ=255) ccaGCAAGGAAAATGAATAATGAGAACCGTCGTTTTGGCCTCCCACGATATGGGATGCCTCTGTATTGATGCTCTGCTGGCCGCCGGTTACGAAATTAGCGACATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCtttt < 1:239730/143‑1 (MQ=255) ccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGGCtttt < 2:1220764/143‑1 (MQ=255) tggCAATGAAGATGAAGAATGATAACCGTCGCTTTTGCCTACCATGATATGGGATGCGTCGGTATTGAATCCCTGCTGGCCGACGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTa < 2:614898/141‑1 (MQ=255) caGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTa > 2:71308/1‑143 (MQ=255) aGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTATCGCCATTTTTACACATACTGATAATCACAGTGAAAAATCCTTTTAt > 1:156517/1‑143 (MQ=255) aGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAACCATACAGAAAAAAAAGATGAAAAAACCATTTAt > 1:771454/1‑143 (MQ=255) ggAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAACTTAGCGCCATTTTTACCCATACTGATAATCCAAGTGAAAAAGCCTTGTATgtaac > 1:1297126/1‑139 (MQ=255) ggAAAATGAATAATGAAAACCGTCGTTTTTGCCTAACACGATATGGGATGCCTTGGTATTGAATCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTTCCAATCTCGTTGCAAAAGCCTTTTATGGCTc > 2:651988/1‑143 (MQ=255) acaTGAATATGGAGATCCGTGGTTCTTGTCTACCACGATCTGGGATGCCTCGGTATTGAAGCCCTGCTGTTCGCCGGTTATGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 1:389271/141‑1 (MQ=255) aaaTGATTAATGAAAACCGTCGTGTTGGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 2:822768/143‑1 (MQ=255) aaTGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAACTTAGCGCCATTTTTACCCATACTGCTACTCCCGGTGAACACGCCCTTTATGCTTCGCTg > 1:157303/1‑143 (MQ=255) aCCGTGTTTTTGGCCGAGCACGATATGTGTTGCCCCGGTATGTAAGCCTTTCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggcggc < 2:1348329/143‑1 (MQ=255) gtgggtttgGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGACATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCCTTACTGGCTCGGTGGCTGGGCCGgcgacgtc > 2:1448186/6‑141 (MQ=255) tcgtTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGaa > 2:475442/1‑143 (MQ=255) tcgtTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGaa > 2:483490/1‑143 (MQ=255) ttttGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAagag < 1:475442/143‑1 (MQ=255) ttttGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTGCGGTGGCTCGTCTGGCGGCGGAAagag < 1:483490/143‑1 (MQ=255) tGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAATTTAGCGCCATTTTTTCCCATACTTTTTTTTCTGGTGAAAAAGAATTTTAGGGTGCGGTGGCTCGTCTGGCGGCGGAAAGAGGCa < 1:427960/143‑1 (MQ=255) cTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATCATCCCGGTGAAAAAGCCTTTTATGGTTCCGTTGCTCTTCTGTCTTCGGAAAGAGGCATTc > 1:350451/1‑143 (MQ=255) cgctatGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATTCTGATAATTCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGttt < 1:950928/140‑1 (MQ=255) cGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGttt < 1:1152855/143‑1 (MQ=255) ggATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTTGCTCGTCTGCCGCCGGATAGAGGCTTTCCGGAATATacgca > 1:966346/1‑142 (MQ=255) gATGCCTCGGTTTGGATGCCCGGCTGGCCGCTGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCg < 2:846839/143‑1 (MQ=255) cTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCAGTGGCTCGTCTGGCGGCGGAACGAGGCATTCCGGGTTATGCCCCGGATaa > 2:426100/1‑143 (MQ=255) ggTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGATAAAGCCTTTTATGGTTCGGTGGCTGGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGt < 1:529649/143‑1 (MQ=255) tATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTa > 1:790418/1‑143 (MQ=255) ttGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATACCGTTAat > 1:80005/1‑143 (MQ=255) gaggCCCTGCTGGCCGCCGGTTACGAAACTAGCGCCATCTTTACCCATACTGATAATCCGGGTGAAAAAGCCGTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAatca < 2:884176/140‑1 (MQ=255) ccacccTGCTGGCAACCAGCTACGAAATTATCTCCATTTTTACCCATACTGATAACCCCGGTGAAAAAGCCTTTTACGGCTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAatcat < 2:605196/140‑1 (MQ=255) cccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCGCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGAGAACGTTAATCATCCg > 1:85833/1‑143 (MQ=255) ccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGACATTCCCGTTCATGCGCCGGATAACGGCAATCATCCGc > 2:114667/1‑143 (MQ=255) | CGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGC > NC_000913/2367970‑2368234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |