mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.5% | 122.3 / 59.9 | 102 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 56 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 382590 | NA (NA) | 86 (1.070) | 68/280 | 0.1 | 2.5% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 571864 | 3386 (42.050) | coding (411/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 381260 = | NA (NA) | 79 (0.980) | 63/280 | 0.1 | 2.3% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 571872 = | 3348 (41.580) | coding (419/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 568559 = | 3313 (40.850) | 47 (0.610) | 18/270 | 4.6 | 1.5% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 3181 (40.970) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 570695 = | 3711 (45.760) | 31 (0.400) | 17/268 | 4.9 | 0.88% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 3455 (44.830) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 570701 | 3678 (45.360) | 30 (0.390) | 14/268 | 5.8 | 0.86% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 3458 (44.870) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 572405 = | 1542 (19.020) | 16 (0.250) +31 bp |
9/220 | 6.3 | 1.3% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||
| * | ? | NC_000913 | = 572325 | 3230 (39.830) | 20 (0.270) | 11/262 | 6.7 | 0.68% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 2827 (37.520) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 18 (0.230) | 10/274 | 7.5 | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 572352 | 2673 (32.960) | 33 (0.420) | 9/272 | 7.9 | 1.4% | intergenic (+101/‑16) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572369 | 2148 (27.460) | coding (2/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 570627 = | 3578 (44.120) | 10 (0.140) | 8/256 | 7.9 | 0.30% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 3358 (45.620) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||