New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3185770 =	39 (0.900)	4 (0.100)	3/254	NT	9.7%	coding (357/552 nt)	ygiL	putative fimbrial protein YgiL
	?	NC_000913	3185787 =	37 (0.880)					coding (374/552 nt)	ygiL	putative fimbrial protein YgiL

TCACTATTCACCTGCAGGACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCAAA  >  NC_000913/3185631‑3185908                                                                                                                                            |                                                                                                                                           tCACTATTCACCTGCAGGACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGcc                                                                                                                                         >  1:120164/1‑143 (MQ=255)      aTTCACCTGCAGGACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACGATGACGGGTCAGTCTGGTCTTCGGAAAAGAAACCAAGAAACTGAAATAGCCCACGCCACtgg                                                                                                                                    >  2:371823/1‑143 (MQ=255)             tGCAGGACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAACATAAAGGAGGAACTGAAATCGACGGCGCCTCtggcgttggc                                                                                                                             <  2:182670/143‑1 (MQ=255)               cAGGACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAACACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGCCGGCGCCACtggcgttgccgt                                                                                                                           >  2:19526/1‑143 (MQ=255)                 ggACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGcgtac                                                                                                                         <  1:695048/143‑1 (MQ=255)                 ggACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGcgtac                                                                                                                         >  1:355265/1‑143 (MQ=255)                  tttgcttggggattccatacgagctttgaaattcagttcctgatagctgttggcatagttgaacgtaatgactaccggagtacctaaagttacttcgccgcgatggctgtccagaatacgtaCGCCACTGGCGTTGGcgtacg                                                                                                                        >  2:783978‑M1/123‑143 (MQ=255)                  gttgctgggggattccatacgagctttgaaattcagttcctgatagctgttggtattgttgaacgtaattactaccggagtacctaaagttacttcgccgctctggctgtccagaatacgtaCGCCACTGGCGTTGGcgtacg                                                                                                                        >  2:294536‑M1/123‑143 (MQ=255)                  gACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAACAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGcgtacg                                                                                                                        >  2:195653/1‑143 (MQ=255)                     tGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCCCCACCGACGTCGGCGTACGTAt                                                                                                                     >  2:41270/1‑143 (MQ=255)                         tGCTGAGTCAGGGTGCAACCACTTTTTTCGCACCCAAAACCACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCCGCGCCACTGGCGTTGGCGCACGTACTCTg                                                                                                                 >  2:604320/1‑143 (MQ=255)                           cTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGa                                                                                                               >  1:681004/1‑143 (MQ=255)                                   gggTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCaga                                                                                                       <  2:276997/143‑1 (MQ=255)                                     gTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAGTCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGTCAGAgc                                                                                                     >  1:209317/1‑143 (MQ=255)                                           ctactTTTTCAAATGCGAAGCTTACTCTCACTACAGCAAATACTATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGTCTTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGaa                                                                                               <  2:690497/143‑1 (MQ=255)                                              ctTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGaa                                                                                               >  1:216189/1‑140 (MQ=255)                                              ctTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGaa                                                                                               <  2:216189/140‑1 (MQ=255)                                               ttATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTCTTCTGGACAGCCAGAGCGGCGAAGTaa                                                                                           >  2:311352/1‑143 (MQ=255)                                                     aaaaGCGAAGGTTACTTTCACTACCGCAATCACCACGACGGATCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACtcgag                                                                                     >  2:465338/1‑139 (MQ=255)                                                         ctgatagctgttggtattgttgaacgtaattactaccggagtacctaaagttacttcgccgctctggctgtccagaatacgtaCGCCACTGGCGTTGGCGTACGTATTCTg                                                                                                                 >  1:726632‑M1/84‑111 (MQ=255)                                                         ctgatagctgttggtattgttgaacgtaattactaccggagtacctaaagttacttcgccgctctggctgtccagaatacgtaCGCCACTGGCGTTGGCGTACGTATTCTg                                                                                                                 <  2:726632‑M1/28‑1 (MQ=255)                                                           gAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTc                                                                               <  1:598498/143‑1 (MQ=255)                                                             aGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCg                                                                             >  1:208556/1‑143 (MQ=255)                                                                    tttCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTaa                                                                      >  1:642583/1‑143 (MQ=255)                                                                    tttCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAACCGGCGGGACCACGGTCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGGAGTGACGTTAGGGACTCCGGTAGTaa                                                                      >  2:684985/1‑143 (MQ=255)                                                                        aCTACAGCAAATACCAGGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTAc                                                                  <  1:37821/143‑1 (MQ=255)                                                                         cTACAGCAAATCCCATTACCGATCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCTGCGGCGCCACTGGCGTTTGCGTACCTATTCTGGACAGCCAGATCTGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACg                                                                 <  2:203526/143‑1 (MQ=255)                                                                              gCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTAcaa                                                            >  1:727145/1‑143 (MQ=255)                                                                                            gggTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAGGTATGTTTAGGTACTCAGGTAGTAATTACGTTCAACAATACCAACAGCt                                              >  1:188814/1‑143 (MQ=255)                                                                                            gggTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACACTACCAACAGCt                                              >  1:20164/1‑143 (MQ=255)                                                                                              gTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTAt                                            >  1:287120/1‑143 (MQ=255)                                                                                                   tCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGa                                       >  2:3710/1‑143 (MQ=255)                                                                                                    cTGATCTTCTGAAAAATACCAAAGAGACTGAAATCCGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGaa                                      <  2:383696/143‑1 (MQ=255)                                                                                                      gATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGGATTCTGGACAGACAGCGCGGCGTAGTAACTTTAGGTACTACGGTAGTAATTACGTTCAACCATACCAACAGCTACCAGGAACt                                    >  2:100261/1‑143 (MQ=255)                                                                                                       aTCTTCTGAAAAATACCAAAGAAACTGAAATCGGTGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTCCAGCAATACCAACAGCTATCAGGAACTg                                   >  2:379937/1‑143 (MQ=255)                                                                                                        tcttctGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGa                                  >  1:821278/1‑143 (MQ=255)                                                                                                         cttctGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGaa                                 <  1:604320/143‑1 (MQ=255)                                                                                                             tGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTc                             >  1:776061/1‑143 (MQ=255)                                                                                                             tGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTc                             >  1:775242/1‑143 (MQ=255)                                                                                                             tGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGAACGTATTCTGGACAGCCAGAGCGGCGCAGTAACTTTAGGTACTCCGGTAGTGATCACGTTCAACAATACCAACAGCTAACAGGAACTGaagagc                             >  2:129781/1‑139 (MQ=255)                                                                                                              gAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCa                            >  1:612030/1‑143 (MQ=255)                                                                                                               aaaaaTACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCaa                           >  1:787095/1‑143 (MQ=255)                                                                                                                      ccAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCAAAGCTCGt                    >  1:338513/1‑143 (MQ=255)                                                                                                                                    aTCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACACTACCAACCGCTATCAGGAACTGAATTTCAGAGCTCGTATGGCATCCCCAAg      >  1:85213/1‑143 (MQ=255)                                                                                                                                       ggcggcGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCaa   <  1:678542/143‑1 (MQ=255)                                                                                                                                        gcggcgCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCaaa  >  1:177606/1‑143 (MQ=255)                                                                                                                                        gcggcgCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTGCAACAATACCAACAGCTATCAGGACCTGAATTTCAAAGCTCGTATGGAACCCCCAAGCaaa  >  2:440041/1‑143 (MQ=255)                                                                                                                                        gcggcgCCACTGGCGTTGGCCTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCaaa  <  1:170238/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                           TCACTATTCACCTGCAGGACTGCATGCTGAGTCAGGGTGGAACTACTTATTCAAAAGCGAAGGTTACTTTCACTACAGCAAATACCATGACGGGTCAGTCTGATCTTCTGAAAAATACCAAAGAAACTGAAATCGGCGGCGCCACTGGCGTTGGCGTACGTATTCTGGACAGCCAGAGCGGCGAAGTAACTTTAGGTACTCCGGTAGTAATTACGTTCAACAATACCAACAGCTATCAGGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCAAA  >  NC_000913/3185631‑3185908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.