| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913 | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4001644 | 1 (0.020) | 63 (1.450) | 53/264 | NT | 98.4% | coding (219/951 nt) | corA | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| ? | NC_000913 | 4001650 = | 1 (0.020) | coding (225/951 nt) | corA | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter | |||||
CAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA > NC_000913/4001502‑4001786 | cgggatggatggATCGTGTCGACCGGGACGACGGCGGGCGACTGCGCGTACAATCTGAACTTGGCCAGAGGCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCGTTGAAGACGACGACGGCCTGCat < 2:271521/139‑1 (MQ=255) gATTGATCTTGCCGAACCGGACGACGACGAGCGACCGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttc < 2:44124‑M1/143‑8 (MQ=255) aTTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTTCAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATAGTGACGAGTCTTTGAAGCCGACGACGGCCTCCATctccttct > 2:819582‑M1/1‑135 (MQ=255) aTTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttct > 1:719389‑M1/1‑135 (MQ=255) cctgtCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGGTCTTTGCAGACGACGACGTCCTGGCTctccttcgtcttct > 1:379863‑M1/3‑129 (MQ=255) tGTCGAACTGGTCGACGACGGCCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttt < 2:661363‑M1/143‑17 (MQ=255) tGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttt < 1:543930‑M1/143‑17 (MQ=255) cGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaa < 2:80766‑M1/143‑20 (MQ=255) gAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaag < 1:643383‑M1/143‑21 (MQ=255) gAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaag > 1:685455‑M1/1‑123 (MQ=255) gAACCGGACGACGACGAGCGACTGCGCGTACAATCTCAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaag < 1:570959‑M1/143‑21 (MQ=255) cGGACGACGACCAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgc < 1:411248‑M1/143‑25 (MQ=255) gacgacgacGAGCGACTGCGCGTACCATCTGAACTTGACCATAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCACCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcgg < 1:303670‑M1/143‑27 (MQ=255) cgacgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCAGCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaa < 1:128244‑M1/143‑29 (MQ=255) gcgagGGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttctttgaagatgcggaagatcacgc < 1:698212‑M1/142‑34 (MQ=255) gaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGACCTGCAGctccctcttcttcctagaagatgcggaagacaacc > 2:671294‑M1/1‑108 (MQ=255) cTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTCCCTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggacgatcacgccggca > 2:152599‑M1/1‑102 (MQ=255) tGCGCGTACCATCTGAACTTGTCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaa < 1:208530‑M1/143‑43 (MQ=255) cgcgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaact > 2:168512‑M1/1‑99 (MQ=255) cgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaacccc < 2:304336‑M1/143‑47 (MQ=255) gTACAATCTGAACTTGGCCAGAGCCTGGCCACACGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactcca > 1:663937‑M1/1‑96 (MQ=255) acacgctgaagGTGGCCAGAGCCTGGCACCCCGCCCGGCACTCGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccact < 2:320851‑M1/138‑50 (MQ=255) aaTCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgt > 1:6536‑M1/1‑92 (MQ=255) ggctcatcTTGTCCATGGCGTGGCAAGTCGCAGGGGACTGCAAGACGGCGAAGCATCGGCACGTTTCTTGGAAGAAGACGGCGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGACGGTAACTCCACtgtg < 2:57280/136‑1 (MQ=255) tGAACTTGGCCGGAGCCTGGCAACCCGCCCGGAATTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca < 2:306348‑M1/143‑56 (MQ=255) tGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca > 1:385416‑M1/1‑88 (MQ=255) aaCTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcgttcttcatcgttgaagatgcggaagatcacgccggtaactccactgtggcatt > 1:430190‑M1/1‑86 (MQ=255) aCTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCTTCGGCCCTTCGCCTTAAAGCCGACCACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcattt < 1:387324‑M1/143‑59 (MQ=255) ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttac > 1:391857‑M1/1‑83 (MQ=255) ccAGAGCCTAGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTATCTTTGACGACGACGGCGGCCTGCATctccttctgcttctttgaagatgcggaagatcacgccgggagctcccctgtggcagttacccgc > 2:536931‑M1/1‑79 (MQ=255) agagCCTGGCAACCCGCCCGGAACTGGAAAACAGCGAAGCAGCGGGACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccacgttggcgtttaccatccg > 1:623773‑M1/1‑77 (MQ=255) caggcaACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatg < 1:478866‑M1/141‑72 (MQ=255) tGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGAAGACGGCCTGCATctccttcctcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgggtg > 2:226677‑M1/1‑71 (MQ=255) aCCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACGACGGCCTGCATctcctgcttcttctttgaagatgcggaagatcacgccggtaactccaccgtggcatttaccatccgtgatggtcgtc < 1:413406‑M1/143‑78 (MQ=255) ccgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctg > 1:727557‑M1/1‑64 (MQ=255) ccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgttta < 1:723872‑M1/143‑84 (MQ=255) ccgGAACAGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgttta < 1:477580‑M1/143‑84 (MQ=255) cgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttac > 1:278539‑M1/1‑59 (MQ=255) gAACTGGAAGACATCGAAGCATCGGCACGTGTCTTTGAAGACGACGACGGCCTGCATctccttcgtcttctctgaagatgcggaagagcacgccggtaactccactgtggcacttaccacccgtgatggccgcccgtctaccg > 2:33350‑M1/1‑57 (MQ=255) tGGCAGCCATCGAAGCCTCGGTACGTTTCTTTGAAGACGACGACGGCCTGCATctccttctttttctttgaagatgcggaagatcacgccggtatctccactgtggcatttaccatccgtgatggtcgtctgtttactctgcg < 2:241901‑M1/143‑91 (MQ=255) cggaAGACTGCGAAGCATCGGCTCGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcg < 2:64265‑M1/142‑91 (MQ=255) acgacATCGAAGCATCGGCACGTTTCTTTGAAGACGACGCCGGCCTGCATctccttcttcctctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtga < 1:352997‑M1/141‑94 (MQ=255) aaGCCATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtga < 2:667429‑M1/143‑94 (MQ=255) aaGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtga < 1:420282‑M1/143‑94 (MQ=255) aaGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactggggcatttaccatccgtgatggtcgtctgtttactctgcgtga < 1:35641‑M1/143‑94 (MQ=255) gACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagc < 1:249826‑M1/143‑96 (MQ=255) cATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttgctctgcgtgagcgt > 1:148805‑M1/1‑46 (MQ=255) cATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgt < 1:493921‑M1/143‑98 (MQ=255) gCATCGGCACGTTTCTTTGAGGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgtgtgagcgtgaactgc < 2:712681‑M1/143‑105 (MQ=255) cATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactc < 2:280193‑M1/124‑87 (MQ=255) cATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactc > 1:280193‑M1/1‑38 (MQ=255) tCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccg < 1:776253‑M1/143‑108 (MQ=255) gCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcgt > 1:250212‑M1/1‑33 (MQ=255) gCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttctgcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgggagcgtgaactgcccgctt < 1:134617‑M1/143‑111 (MQ=255) cACGTTTCGTTGAAGACGACGACTGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttt < 2:151898‑M1/143‑112 (MQ=255) cgttgcgttgAAGACGACGACGGCCTGCATctccttcttcttctgtgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttc < 2:749761‑M1/143‑114 (MQ=255) tttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgacccgcccgctctccgt > 1:186325‑M1/1‑28 (MQ=255) ttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtacctccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtc < 2:528341‑M1/143‑117 (MQ=255) tcgttgaaGCCGCCGACGGCCTGCAGctccttcttcttctttgaagaggcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtct < 1:617494‑M1/140‑118 (MQ=255) gAAGACGGCGGCGGGCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcattgaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatc < 1:117330‑M1/143‑123 (MQ=255) gacgacgacGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta < 1:24552‑M1/143‑126 (MQ=255) gacgacgacGGCCTGCATctccttcctcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta < 1:97606‑M1/143‑126 (MQ=255) cgacgacgGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtacctccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatg < 1:173548‑M1/143‑128 (MQ=255) gacgccgGCCTGCAGctccttctgcgcctctgaagaggcggaagatcacgccggtaactccactgtggcatttaccatccttgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgc < 1:10766‑M1/143‑129 (MQ=255) ggCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctatatcgtatgcgtgccc > 1:555106‑M1/1‑9 (MQ=255) tGCATctccttcttcttctttgaagatgcggaggatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtgcccgtag < 2:6536‑M1/143‑139 (MQ=255) tctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgctgttcgtctgtatcgtatgcgtgcccgtagccag > 1:590385‑M1/1‑1 (MQ=255) | CAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA > NC_000913/4001502‑4001786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |