| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,024,339 | A→G | 12.9% | intergenic (+153/‑12) | xdhD → / → xanQ | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit/xanthine:H(+) symporter XanQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,024,339 | 0 | A | G | 12.9% | 71.5 / 3.7 | 31 | intergenic (+153/‑12) | xdhD/xanQ | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit/xanthine:H(+) symporter XanQ |
| Reads supporting (aligned to +/- strand): ref base A (9/18); new base G (2/2); total (11/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.26e-01 | |||||||||||
GCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGTTGGCAATTTTCGTTCCGATGGTAACCCCC > NC_000913/3024209‑3024476 | gcCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGAGAAGGGa > 1:573514/1‑143 (MQ=255) acTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGGGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGAt < 1:118380/142‑1 (MQ=255) tGTCTGAACGATGACTAAATGGTGACTGCGACGTTGCCATAAACCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGAtata < 2:594103/143‑1 (MQ=255) tttGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATaaa < 1:244024/143‑1 (MQ=255) tGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAAcc < 2:269898/143‑1 (MQ=255) cGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGc > 1:671843/1‑143 (MQ=255) aTGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAg < 2:568848/143‑1 (MQ=255) tGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAgg > 2:258507/1‑143 (MQ=255) aaaTAGTGACTGCGGAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTg < 2:184225/143‑1 (MQ=255) aaaTAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTg < 2:508697/143‑1 (MQ=255) aaTAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGa < 2:238223/143‑1 (MQ=255) aTAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGAc < 2:285345/143‑1 (MQ=255) aTAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGAc < 1:781879/143‑1 (MQ=255) gACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTGTTGGGTCCCAAAAGCTTTGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTtat < 1:611423/143‑1 (MQ=255) cGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGAGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTg > 1:663689/1‑143 (MQ=255) aaTGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACt < 1:678176/143‑1 (MQ=255) agaTAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATATGAACTggag > 2:205458/1‑143 (MQ=255) gaTAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTggagg < 1:297723/143‑1 (MQ=255) tAAGCCGTTCTCAAGGCGTCCTGCGCCCCACATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGAt < 1:310273/143‑1 (MQ=255) gCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGGTCAAATTTACGTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGc < 2:642387/143‑1 (MQ=255) cGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAGGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGccc > 2:74832/1‑143 (MQ=255) cGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAGGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGccc > 2:486911/1‑143 (MQ=255) cgacccAACTTCGTGGGAATTTATTTTACTAATTCAGAGGATCAAATTTACTTTAAAAGGAGTGCAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGctct < 2:830466/140‑1 (MQ=255) cAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGTTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTg < 1:9149/143‑1 (MQ=255) cAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTg > 1:313030/1‑143 (MQ=255) tttACTAATTCAGATGATCAAATTTACTTTAAAGGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGtt < 1:74832/143‑1 (MQ=255) tttACTAATTCAGATGATCAAATTTACTTTAAAGGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGtt < 1:486911/143‑1 (MQ=255) aTTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGTTGGCaaca > 2:286537/1‑141 (MQ=255) aCTTTAAAAGGAGTGAAGGGCTGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGTTGGCAATTTTCGTTCCGATGGTAAcc < 1:593787/143‑1 (MQ=255) tttAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGTTGGCAATTTTCGTTCCGATGGTAAcccc > 1:685440/1‑143 (MQ=255) ttAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTCTTGGCACTATTCGTTCCGATGGTAGccccc > 2:827387/1‑143 (MQ=255) | GCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTCCTGCGCCCCAAATTCGTGGGAATTTATTTTACTAATTCAGATGATCAAATTTACTTTAAAAGGAGTGAAGGGATGTCTGATATAAACCATGCAGGTTCTGACCTTATATTTGAACTGGAGGATCGCCCTCCCTTTCATCAGGCTCTCGTTGGTGCCATTACCCATCTGTTGGCAATTTTCGTTCCGATGGTAACCCCC > NC_000913/3024209‑3024476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |