| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,296,060 | C→T | 26.2% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.2% | 117.9 / 50.7 | 95 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (37/30); new base T (12/12); total (53/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
AAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC > NC_000913/4295919‑4296202 | aaGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 2:375024/143‑1 (MQ=17) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:146381/1‑143 (MQ=32) cGTTTATGCCGCATCCGACATCAACGCCTGATGCGGCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTGG‑GTCGGATAAGGCGTTTACGCCGCATGCGACATCAGCGcccg > 1:64457/1‑141 (MQ=255) ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATGCAGCGTGATTGTGTAG‑GGCGGATAAGGCGTTTACGCCGCATCCGACATCCGCGCCTGaag > 2:471652/1‑141 (MQ=11) tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑c > 1:579219/1‑143 (MQ=17) ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACg < 1:823320/143‑1 (MQ=17) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCCATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGGTTACGCCGCATCCGACATCAAAGCCTCATG‑CCACga > 2:276598/1‑142 (MQ=11) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGc > 2:495590/1‑143 (MQ=32) ccgacGACATCAACGCCTGAGGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCtt < 1:420921/139‑1 (MQ=17) tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGACTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GACGGATAAGGCGGTTACGCCGCATACGACATCAATACCTGATG‑CCACGCTAGc > 2:35093/1‑143 (MQ=11) ccGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGcc < 1:227601/143‑1 (MQ=21) ggcgtCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCcgc < 2:378773/139‑1 (MQ=12) cATGAACGGCTGATGCGACGCTGAAGGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGt < 2:805138/143‑1 (MQ=255) aTCAACGCCTGATGCGACGCTTGAAGTGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTc < 1:525981/143‑1 (MQ=255) aTCAACGCCTGATGCGACGCGTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTc < 1:558072/143‑1 (MQ=25) tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGCCG‑CGCCGCTTGCcgcgccc > 2:221416/1‑140 (MQ=11) tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCt < 1:287787/143‑1 (MQ=39) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAGTTTGTAG‑GTCGGATACGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCActtctt > 1:5229/1‑143 (MQ=11) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGCTAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTa > 1:130047/1‑143 (MQ=25) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACCTCAACGCCTGATG‑CGACGCTTGCCGCGTCTTa > 1:592547/1‑143 (MQ=37) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCtca > 1:816884/1‑141 (MQ=25) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTa > 2:436996/1‑143 (MQ=25) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATCTAGCGCGATTGTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACGTCACGCCCTGATG‑CCACGCTCGCcgcgcccgc > 2:767303/1‑138 (MQ=11) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCGGATG‑CGACGCTTGCCGCGTCTTATc > 1:385798/1‑143 (MQ=25) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg < 1:417790/143‑1 (MQ=39) ccTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCCTGCCGCGCCTTATCAg > 2:87858/1‑143 (MQ=11) gtGATGCGACGCGTAACGGGTCTCATCAGGCCCACGCCAGACGGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAgg < 2:734254/142‑1 (MQ=11) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGc < 1:582003/143‑1 (MQ=39) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAGTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGc > 2:508476/1‑143 (MQ=25) tGAGGCGACGCTTGCGGCGGCTTGTCAGGCGTACGCCAGACAGCGCAATAGCCTGATTTAGCCTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGc < 2:138656/143‑1 (MQ=11) gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAGGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCCGGCCCAc > 1:202683/1‑143 (MQ=255) gtcGCTTACCCCGTCTCATCAGGCCTACGCCAGGCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGc < 2:397133/141‑1 (MQ=255) gccGCTTCACGCGTCTTATCAGCCTTACGCGACACACCGCAATAGCCTGATGTAGCGCCATTTTGTAG‑GCCGGAGACGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGc < 2:238926/141‑1 (MQ=14) gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGGTGTTGGAG‑GTCGGATGAGGCGTTTACGCCGAATGAGAAACCAAAGCCTGCTG‑CCACGCTTGCCGCGCCTTATCAGGCCTatct > 2:501340/1‑140 (MQ=11) gCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc > 2:966/1‑103 (MQ=33) gCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACACCGCATCCGACATCAATGc < 1:966/103‑1 (MQ=12) gttACCGCGTGTCGTCAGGCGGGCGCCAGACAGCGGTGTAGCCTGATTCAGCGTGAGTTTGTAG‑GTCGGACAAGGGGTTTACGCCGCATCCGGCATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa < 2:48213/142‑1 (MQ=14) aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTG‑TTATATCGACCCGGTGGATGAGTAGACGCCGCATCCGACATCAACGCCTGATG‑CGACGCATACCGCCACCCCTCCGGCCAACGCCAgcgag > 2:823320/1‑139 (MQ=2) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg < 1:118931/143‑1 (MQ=38) gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCAGCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGGCAgcgg > 1:306273/1‑142 (MQ=255) tgTCTTTTCATGCCTACGCCACACCGCGCACCGGGCTCATCTCGCGTGGTTCCGTAC‑TTCGGATAAAGCGCTCACGCCCGATCTGGCATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCa < 2:54793/142‑1 (MQ=2) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGCTG‑CGACGCCTGCCGCGTCTTATCAGGCCTACGCTAGCCGGCGCatg > 1:154624/1‑141 (MQ=11) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:816424/1‑128 (MQ=38) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc < 2:436035/88‑1 (MQ=25) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCcgc < 1:567191/107‑1 (MQ=25) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCcgc > 2:567191/1‑107 (MQ=25) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg < 1:334539/117‑1 (MQ=25) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg > 2:334539/1‑117 (MQ=37) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTat < 2:666007/119‑2 (MQ=25) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:666007/1‑119 (MQ=255) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGAGATTTTGTAG‑GCCGGATAAGGCGTTTACGCCGCCTCCGAAAACAA‑GCAATATGTCAATAGGTGCCGCGTCGTATCAGGCCTACGCCAGACAGCGCAGTAGCCTGAttgt > 1:387923/1‑141 (MQ=2) tACGCTAGGCGGCGCACTCGTCAGATTTAGCGTGATTTGGTAG‑GTCGGGTAAGGCGTTTACGCCGCGCCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg < 2:37747/143‑1 (MQ=11) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGc < 2:164006/93‑1 (MQ=21) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGc > 1:164006/1‑93 (MQ=34) tgACCGCGCAGGAGCCTGATTCAGCGTGCCATCGAAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt < 2:173081/142‑1 (MQ=11) ccAGCGCATGAGCACGATTTGGCGTTATTTTGTGG‑GTCGGCTCAGGCGTTTACGCCCCACCCTACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt < 1:172229/142‑1 (MQ=11) aCATCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt < 1:807337/143‑1 (MQ=255) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt < 1:5869/143‑1 (MQ=38) gcgcAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt > 1:332951/1‑143 (MQ=38) cgcAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:46796/1‑71 (MQ=35) cgcAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg > 2:79837/1‑98 (MQ=255) cgcAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg < 1:79837/98‑1 (MQ=255) tGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCGGCGTCTTATCAGGCCTACGCCAGACGGCGGAATAGCTTGCTTTGGCGTGGTTTTGGAGGTCGGATaa > 1:659893/1‑143 (MQ=11) cGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCGGCGCACTAGCCTGATTTCGCGTCACTCTCGAGGTCGGATAAGGCGTTTa > 2:831333/1‑143 (MQ=14) cGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACCCCAGACAGCGCAATAGCCTGATTTCGCGTCATTTTGTAGGTCGCATAAGGCGtttg > 2:476996/1‑142 (MQ=255) gTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCATTAGCCTGATTTCGCGTGATTCTTTATGTCGGATACGGCGtttct > 1:563563/1‑141 (MQ=14) gTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt < 1:643019/143‑1 (MQ=38) tGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATGGCGTGATATACCGTCATTCTCTAGGTCGGATCAAGCGattcag > 2:332537/1‑140 (MQ=14) gATTTTGTAG‑GTCGGATACGGCGTTTACGCCGCTTCCGACATCATCGCCCGATG‑CCCCGCTTGCCGCGTCTTATCAGGCCCACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc < 2:222071/143‑1 (MQ=11) gATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCa > 1:311593/1‑76 (MQ=255) aTTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTCCGCCTGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 1:532067/143‑1 (MQ=255) ttttGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg < 2:765851/75‑1 (MQ=255) ttttGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg > 1:765851/1‑75 (MQ=255) ttttGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCg > 2:596889/1‑143 (MQ=25) tgagagggCGTTTCCGCCCCGGCCGGCATGAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc < 2:391098/137‑1 (MQ=11) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc < 1:495590/143‑1 (MQ=38) gCGTTTACGCCGCATCCGACATCAATGCCTGATG‑CGAc < 1:58/38‑1 (MQ=14) gccgcATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAGGCCTGATGCGAc > 2:382750/1‑143 (MQ=25) cgcATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCa > 1:582592/1‑46 (MQ=40) cATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:478612/1‑143 (MQ=35) gtccgcgaTCAACGCCTGATG‑CGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTa < 2:746410/136‑1 (MQ=12) tCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCttca > 1:43386/1‑141 (MQ=25) cGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGGGTACGGAAGAACGCGCAATAGAATGCTACAATAGCATTCCGGGGGTCGGATAAGGCGTTTGTGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcg > 1:619567/1‑143 (MQ=2) cGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCGTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcg > 1:215119/1‑143 (MQ=25) gACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTTTGTAGGTCGGATCAGGCGTTTATGCCACATCCCACATCCACCCCTGATGCGACGCttccacc > 2:588453/1‑138 (MQ=11) gACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTTTATGCCGCATCCGACATCAACGCCTGCTGCGACGCTTGAcgc > 1:452615/1‑143 (MQ=255) gACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAc < 2:669696/116‑1 (MQ=37) aCATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGAcgcg > 1:674886/1‑143 (MQ=25) aCATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgcg > 1:250515/1‑143 (MQ=35) aCATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTCTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtgacagcg > 2:227601/1‑136 (MQ=255) aTCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTc < 1:603714/143‑1 (MQ=34) cAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa < 1:410839/89‑1 (MQ=35) aaCGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGACTAATGCGACGCTTAACGCCTCTTa > 2:58363/1‑143 (MQ=255) aCGCCTTATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAt < 1:672384/143‑1 (MQ=14) aCGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCTCGATGTGACGCGTAACGCGTCTCAt > 1:567140/1‑143 (MQ=11) cGCCTGATG‑CGACGCTTGCCGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATc < 2:102797/143‑1 (MQ=11) | AAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG‑GTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC > NC_000913/4295919‑4296202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |