mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,661,711 | 0 | G | T | 62.1% | 21.2 / 17.4 | 30 | R141S (CGT→AGT) | iscR | DNA‑binding transcriptional dual regulator IscR |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.6% | 78.0 / 49.8 | 81 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4295809 | 73 (2.110) | 4 (0.120) | 4/266 | 3.8 | 5.7% | intergenic (+15/+627) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| ? | NC_000913 | = 4295817 | 65 (2.000) | intergenic (+23/+619) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | = 4109851 | 59 (1.700) | 4 (0.120) | 4/266 | 3.8 | 6.9% | intergenic (+28/‑79) | sbp/cdh | sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp/CDP‑diacylglycerol diphosphatase |
| ? | NC_000913 | = 4109862 | 53 (1.630) | intergenic (+39/‑68) | sbp/cdh | sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp/CDP‑diacylglycerol diphosphatase | |||||
| * | ? | NC_000913 | 3948426 = | 70 (2.020) | 5 (0.150) | 4/266 | 3.8 | 7.4% | intergenic (+2/+23) | maoP/yifB | macrodomain Ori protein/putative magnesium chelatase YifB |
| ? | NC_000913 | 3948449 = | 60 (1.850) | coding (1521/1521 nt) | yifB | putative magnesium chelatase YifB | |||||
| * | ? | NC_000913 | 1417458 = | 83 (2.400) | 4 (0.120) | 4/264 | 3.8 | 4.7% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC |
| ? | NC_000913 | 1417483 = | 86 (2.670) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC | |||||
| * | ? | NC_000913 | = 4094682 | NA (NA) | 11 (0.380) +23 bp |
3/238 | 3.9 | NA | intergenic (‑410/+41) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| ? | NC_000913 | 4285324 = | NA (NA) | noncoding (13/34 nt) | other | REP320a | |||||
| * | ? | NC_000913 | 4094338 = | NA (NA) | 22 (0.760) +23 bp |
3/238 | 3.9 | NA | noncoding (11/32 nt) | other | REP299a |
| ? | NC_000913 | = 4094682 | NA (NA) | intergenic (‑410/+41) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 1028361 = | NA (NA) | 3 (0.100) | 3/256 | 4.2 | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein with NAD(P)‑binding Rossmann‑fold domain/heat shock protein, hemimethylated DNA‑binding protein |
| ? | NC_000913 | 1028395 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein with NAD(P)‑binding Rossmann‑fold domain/heat shock protein, hemimethylated DNA‑binding protein | |||||
| * | ? | NC_000913 | = 4297512 | 53 (1.530) | 3 (0.090) | 3/268 | 4.3 | 5.5% | coding (1855/2148 nt) | fdhF | formate dehydrogenase H |
| ? | NC_000913 | = 4297530 | 53 (1.620) | coding (1837/2148 nt) | fdhF | formate dehydrogenase H | |||||
| * | ? | NC_000913 | 1426409 = | 92 (2.660) | 3 (0.090) | 3/268 | 4.3 | 3.2% | intergenic (+429/‑45) | ydaY/ynaA | Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA |
| ? | NC_000913 | 1426431 = | 97 (2.970) | intergenic (+451/‑23) | ydaY/ynaA | Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA | |||||
| * | ? | NC_000913 | = 4108638 | NA (NA) | 3 (0.090) | 3/270 | 4.4 | NA | noncoding (32/34 nt) | other | REP302b |
| ? | NC_000913 | = 4108668 | NA (NA) | noncoding (2/34 nt) | other | REP302b | |||||