| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 125,085 | Δ1 bp | 100% | coding (2069/2664 nt) | aceE → | pyruvate dehydrogenase E1 component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 125,085 | 0 | T | . | 100.0% | 70.9 / NA | 17 | coding (2069/2664 nt) | aceE | pyruvate dehydrogenase E1 component |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/10); total (7/10) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TCACAGCCACATTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACATCACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGTTCTATCCT > NC_000913/124948‑125223 | tCACAGCCACATTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGAGTAAGTACGGTGAAAAAAAAGAGAACGTTTACTACTACA‑CACTAc > 1:303526/1‑143 (MQ=255) ccACATGCTGTCGCTGACTATCCCGAACTGTATCTCGTACGACCCGGCTTACGCTTACGAAGTTGCTGCCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTACGCTGaa < 2:311542/143‑1 (MQ=255) tCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGaaaa < 2:405702/143‑1 (MQ=255) cGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCCTCATGCATGACAGTCTGGAGCGTATGTACGAAGAAAAACAAGAGAACGATTACTACTACA‑CACTACGCTGAACGAAAACTAcc > 1:52252/1‑143 (MQ=255) cccGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTAGGTACGGTGAAAAACAAGAGAACGTTGACTACTACA‑CAATACAGAGAACGAAAACTTCAATATGCCGGc > 2:278274/1‑143 (MQ=255) tttgttACGACCTGGCTTACGCTTACGAAGTTGTTGTCATCTTGCATTACGGTTTTGAGTTTATTTATGGTGAATAACTAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAg < 1:470969/139‑1 (MQ=255) tctcTTTCGACCCCGTCTGCGCTTAGCGAGTTGCGGTTATCATGCCTGACGGTCTGGAGCGTACGTACGGTTAAAATTAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAg < 2:413839/143‑1 (MQ=255) ttACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTTGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGc < 1:420009/143‑1 (MQ=255) cGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAg < 2:364289/143‑1 (MQ=255) gAAGTTGCTGTCATCATGCACGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCAGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGt > 1:255393/1‑143 (MQ=255) tGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTGCACTGAACGAAAACTACCACATCCCGCCAATGCCGGCAGGTGCTGAGGAAGGAATTCGTAAAAGTAACTaaac > 2:214573/1‑140 (MQ=255) gACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAAATACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAACAGTATCTCCAAACACGACACAAtt > 2:329327/1‑143 (MQ=255) gTACGGTCAAAAACAAGAGAACGTTTACTACTACA‑CACTACTCTGAACGAAAACTACCACATGCCGGTAATGACTGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTaa < 1:292181/143‑1 (MQ=255) aaaaCAAGAGAACGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCGGAAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAgct > 1:25329/1‑143 (MQ=255) cAAGAGAACGTTTACTACTACA‑CACTACGGTGAACGATAACTACTATATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTc < 1:492762/143‑1 (MQ=255) aCGTTTACTACTACA‑CACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGGATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCg < 2:252497/143‑1 (MQ=255) tttACTACTACA‑CTGTCGGCTGATCTAATACTTTCACATGACAGAAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGtt < 1:304267/143‑1 (MQ=255) ctactCACTACTCCGATCGAAAACTACCACATGCGGGTAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAATGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGTTCTATCCt < 2:303526/139‑1 (MQ=255) | TCACAGCCACATTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACATCACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGTTCTATCCT > NC_000913/124948‑125223 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |