| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1048415 = | 21 (0.860) | 3 (0.130) | 3/252 | NT | 13.0% | coding (277/747 nt) | gfcC | capsule biosynthesis GfcC family protein |
| ? | NC_000913 | 1048443 = | 20 (0.860) | coding (249/747 nt) | gfcC | capsule biosynthesis GfcC family protein | |||||
TGTTCTCATCCACTCGTACAAAATCAGGGTCCAGTTTGACCGGTAAGCGACCAGTGATATTGAGATTGAGTAACTGCTGGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATCGCGCAGTTGCGGTTGTGTCACCAACTGGACAACATTTTCCA > NC_000913/1048301‑1048567 | gtccagttggtgacacaaccgtaactgcgcgatcgcctctggtggcctggtggcttgctgaccgactctgcggcgaaagctaaagcgcttaaagactaccaacatgtcatggcaCAGCTTCTGCTTCCCAGGAAGCAAGCtgt > 2:125027‑M1/115‑143 (MQ=255) tcgcttCCACTCGTACTATATCAGGTTCCAGTGTGACCGGTGAGTGATCAGTGATATTTAGATTGAGTAACTGCTGGCGCACGGATTTAATTGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCTCAGGAAGCAAGCTGTGcc < 2:164851/138‑1 (MQ=255) aTCCACTCGTACAAAATCAGGGTCCAGTTTGACCGGTAAGCGACCAGTGATATTGAGATTGAGTAACTGCTGGCGCACGAATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGa > 1:364142/1‑143 (MQ=255) tCCACTCGTACAAAATCAGGGTCCAGTTTGACCGGTAAGCGACCAGTGATATTGAGATTGAGTAACTGCTGGCGCACGGATTCACGTGGTGCCGCCACATCGTCGTCCGCTTCTGCTTCCCAGGCAGCAAGCTGTGCCATGAc > 2:422633/1‑143 (MQ=255) aTCAGGGTCCAGTTTGACCGGTAAGCGACCAGTGATATTGAGATTGAGTAACTGCTGGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGACACACGCTGTGACATGACATGTTGGGAGACtt > 2:394628/1‑143 (MQ=255) aTCAGGGTCCAGTTTGACCGGTAAGCGACCAGTGATATTGAGATTGAGTAACTGCTGGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCtt > 2:148343/1‑143 (MQ=255) ttgagattgagTAACTGCTGGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGTTTCTGCTTCCTAGTAAGCAAGCTGTGCAAGGACATGTGGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCaa < 1:51347/143‑1 (MQ=255) tcgaggttgagTACCTGCTGGCGCATGTATTTTATCGCTCCCGCCACATCGTCGTCAGCTTCTCCTTCGCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCaa < 2:143090/141‑1 (MQ=255) gtgagTAACTGCTGGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAGGGCAcc < 1:401742/142‑1 (MQ=255) tgctgGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAACCAAGCTATGCCCTGACATGTTGGTAGTCTCTAACAGCTTTACCCTTCGCCCCACAGTCGGCCAGCAAGGCACCAGCccccca > 2:449466/1‑143 (MQ=255) cACGGATTTAATCGTTGCCGCCACATCGTCGTCAGTTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGGTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGAt < 1:97957/143‑1 (MQ=255) gATTTAATCTTTGCCGCCATATCGTCGTCAGCTTCTGCTTCCCAAGAAGCAAGTTTTGTTATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATcgcg < 1:444726/143‑1 (MQ=255) gATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGGAAGGCACAAGGACATGAGAGGCGATcgcg > 2:334271/1‑143 (MQ=255) caTTTAATCGTTGCCGCCACATCGTCTTTATTTTTTTTTTTCTAGGAAGCAAGAGGGGCCAGGACACGTCGGGAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATcgcg < 1:424003/142‑1 (MQ=255) tttAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATCGCGCa > 2:442141/1‑143 (MQ=255) aTCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTACGCCCCAGAGTCGGTCAGCAAGGCACCAGGCCACTAGAGGCGAACGCGGAGtgg > 2:146267/1‑141 (MQ=255) ccgccACAGCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATCGCGCAGTTGCGGTtgt < 2:384829/143‑1 (MQ=255) cgccACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTACGCGCTTTAGCTTTCGCCGCAGAGTCAGTCAGCAAAGCACCAGGCCACCAGAGGCGATCGCGCAGTTGCGGTtgtg > 1:312828/1‑143 (MQ=255) cacaTCGTCGTCAGCTTCTGCTTCCCAGGATGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTCGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATCGCGCAGTTGCGGTTGTGTCa < 1:481568/143‑1 (MQ=255) tcgtcgTCAGTTTCTGCTTCTTATGAGGCAATTTGTGTCATGACATGTTGGTAGTCATTAAGCGCAGCAACAACCGCCGCAGAGTCGGGCAGCAAGGCACCAGGCCACCAGAGGGGATCGCGCAGTTGCGGTTGTGTCACCaa < 1:16176/143‑1 (MQ=255) gtcgtcAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATCGCGCAGTTGCGGTTGTGTCACCAACt < 2:78335/143‑1 (MQ=255) acagcttgcttcctgggaagcagaagctgTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGCCACCAGGCCACCAGAGGCGATCGCGCAGTTACGGTTGTGTCACCAACTGGac > 2:125027‑M2/30‑143 (MQ=255) cttgcttcctgggaagcagaagctgTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAg > 1:47667‑M2/26‑93 (MQ=255) cttgcttcctgggaagcagaagctgTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAg < 2:47667‑M2/68‑1 (MQ=255) CTTCTGCTTCCCACGAAGCAAGCTTTGCCATGACTTGTTTTTTGTCTTTAATCTCTTTTTTTTTCGCCGCAGAGTCGGTCAGCAAGGCACCCGGCCACCAGAGGCGATCGCGCAGTTGCGGTTGTGTCACCAACTGGacaaca > 1:87339‑M1/1‑143 (MQ=255) ttCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCAGCAGAGACGGTAAGCAAGGCACAAGGCCACCAGAGGCGATCGCGCAGTTGCGGTTGTGTCACCAACTGGACAACATTTTCCa > 1:105833/1‑143 (MQ=255) | TGTTCTCATCCACTCGTACAAAATCAGGGTCCAGTTTGACCGGTAAGCGACCAGTGATATTGAGATTGAGTAACTGCTGGCGCACGGATTTAATCGTTGCCGCCACATCGTCGTCAGCTTCTGCTTCCCAGGAAGCAAGCTGTGCCATGACATGTTGGTAGTCTTTAAGCGCTTTAGCTTTCGCCGCAGAGTCGGTCAGCAAGGCACCAGGCCACCAGAGGCGATCGCGCAGTTGCGGTTGTGTCACCAACTGGACAACATTTTCCA > NC_000913/1048301‑1048567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |