| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 4 (0.170) | 3/252 | NT | 16.6% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 21 (0.860) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
AGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAA > NC_000913/4038674‑4038951 | aGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCTTTCTTTAAGCTTGTGAATGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg < 1:400147/143‑1 (MQ=255) cGGCAGCGACACTATGTGTTGTTGGTTAGGGTAGCGTTCTTTAAGCCTGTGAAGGTGTGCTGTTAGGCATGGTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGa < 1:128002/143‑1 (MQ=14) cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGATGACATAAGTGACGATAAAGCGGGTGAACAGCGCGCTCGCCGGAAGa > 2:474704/1‑143 (MQ=255) gACACTATGTGTTGTTGGGTAGGGGAGAGTTCTGTAAGCCCGTGAAGGTGTGCTGTGAGGGATGCTGGAGGTATCAGAAGTGAGAATGCTGACATCAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggg > 2:364559/1‑143 (MQ=14) acTATGTGTTGGTGGGTAGGTGAGCGTTCTGTTATCTTGTGATGGTTTGCTGTGAGGCATGCTGAAGGTAGCAGAAGTGAGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc < 1:63599/143‑1 (MQ=11) tATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAACGGGTGAAAAGCACGCTCGCCGGAAGACCAAGGGTTCCt > 1:310906/1‑143 (MQ=25) gtcgttgttGGGTAGGGGAGCGTTCTGTACGCTTGTGATGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt < 2:475730/140‑1 (MQ=9) ttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa > 1:220056/1‑143 (MQ=32) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGACGTGCGACTGCTGACATAAGTAACGATAAAGCGGGTGCAAAGCCCGCTCGCCGCAACACCCAGGGTGCCTGTCAAACGt > 2:491512/1‑143 (MQ=11) ttggTAGGTGAGCGTTGTGTAATCCTGTGAAGGTGTGCTGTGGGGCTTGCTGGATGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt < 1:354139/141‑1 (MQ=11) gggAGTGTTCGGTAAGCCTGTGAATGTGTGCTGTGAGGCATGGTGGAGGTATGTGAAGTGGGAATGCTGACAGAAGTAATGATAAAGCGGGTGAAAAGCCCGCTTGCCTGAAGATCATGGGTTCCTTTCCAACGTTAATCgcg < 2:288135/143‑3 (MQ=11) gggAGGGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg < 2:330555/143‑1 (MQ=17) gggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGCGGTATCAGCATTGCGAATGCTGAAATAAATAAAAATAAAAAGAGAAAAAAGCACGCTCGCCGGAAGACAAAGGGTTCCTGTCAAAAGGTAATCggg > 1:41718/1‑143 (MQ=11) gggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGAACACTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg > 1:219201/1‑143 (MQ=12) gAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAGGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCGACGTTAAGCGGGGc > 2:323269/1‑143 (MQ=12) ggcgttgaGCCTGTTAGGGTGTGGTGTGAGGCAGTCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCTCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCTGGGCAGGGt < 2:308888/136‑1 (MQ=11) tGTAAGCCTGTGAAGATGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGCTAATCGGGGCAGGGTGAg > 2:410083/1‑143 (MQ=17) gaGCCTGTGCAGGTGTGCTGTGAGTCATGCTGTTGGTATCAGAAGTGCGAGTGCTTGCATGAGTAACGATAAAGCGGGTGAACAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg < 2:47852/142‑1 (MQ=11) gccttcaaaGCTGGGCTGTAGGGCATGCTGGAGGTGTCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGTGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc < 2:81026/136‑1 (MQ=1) gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTATCGATCCCGCGGGTGAAAAGCAAGCTCGCCGGAAAACCAAGGGTTCATGTCCAACGTTAATAGGGGCAGGGTGAGTCGAc > 1:395829/1‑143 (MQ=11) cTGTGAAGGTGTGCTGTGAGGAATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACGAAGGATTCCTGTCCAACGTCACACGGGCCAGGGTGAGCCGAcac > 2:187334/1‑141 (MQ=11) tgtgAAGGTGTGCTGTGAGGCATGCGGGAGGTATCAGAAGTGCGAATGCTGACATCAGTAACGATAAAGCAGGTGAAAAACACGCTCAACGAAAAACCAAGGGATACAATCAAACATTAATCGGGGCAGAATAAGTCGAaccc > 1:162846/1‑143 (MQ=2) cTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggctcacagagcgctcccctacccaacaacacatacac < 2:3384‑M2/143‑106 (MQ=255) gATAAAGCGGGTGAAAAGCCCGCTttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgccgctgccgcagc < 2:52980‑M2/143‑120 (MQ=255) aTAAAGCGGGTGAAAAGCCCGCTttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagct < 2:171999‑M2/143‑121 (MQ=255) aTAAAGCGGGTGAAAAGCCCGCTttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttaaagaatgctcaccaacctaaaaacgcataaacgtagctgccacaact < 1:401083‑M2/143‑121 (MQ=255) cccTCTttatcgttacttatgtcagcattcgcacttctgatacctccatcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcggtgcatggtttagc > 1:424189‑M2/1‑6 (MQ=255) cccGCTttctcgtgacttatgcctgcattcgcactgctgatccctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcggtgcatggtttagc > 2:330922‑M2/1‑6 (MQ=255) cccGCGttatcgttatttatgtcagcattcgcgcttctgatgcctccagcatgcctcacagcacaccttcgcaggcttacagatcgctcggctacgcagcaacgcataagcgtcgctgccgcagcttcggtgcatggtttagc > 2:413324‑M2/1‑6 (MQ=255) cctttatcgttacttatgtcagcattcgcacttctgatacctctagcatgccttacagctcaccttcgttggcttatagatcgctccactagccaacaaggcataagcgtcgctgccgcagcttcggtgcatggtttagcccc > 1:120871‑M2/2‑3 (MQ=255) | AGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAA > NC_000913/4038674‑4038951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |