| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,486,157 | A→C | 100% | E13A (GAA→GCA) | crp → | DNA‑binding transcriptional dual regulator CRP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,486,157 | 0 | A | C | 100.0% | 78.5 / NA | 30 | E13A (GAA→GCA) | crp | DNA‑binding transcriptional dual regulator CRP |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (18/12); total (18/12) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAA > NC_000913/3486024‑3486296 | aGCCCATTCCCGGTTAGCGGTAAGCATAGTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGGGAAACTTTATAATAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCtt < 2:5908/143‑1 (MQ=255) gCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAAGCGCAAAAAGAACCGACTCTCGCATGGTTCTTg > 2:173089/1‑143 (MQ=255) cccTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTGCTTgac > 2:241798/1‑141 (MQ=255) cccTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTAACAGGCAAAGGAAAAAACAAAAAACAGAGAAAAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGtc > 1:284345/1‑143 (MQ=255) aGGTAGCGGGAAGCATATTTCGGTAATCCAGAGACATCGTCGTTATCTGGCTCTGTAGAAAGCTTATAACAGAGGTTTTCCGCCCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGcc < 1:438507/143‑1 (MQ=255) tAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCcaca > 1:20428/1‑143 (MQ=255) ggAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGTATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACACGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCAt > 1:396439/1‑143 (MQ=255) ggAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCCTGGGTCTTGTCTCATTGCCACATTCAt > 2:69211/1‑143 (MQ=255) gCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGACAACCGCGCATGGTGCTTGGCAAACAGCAAACAGACCCGACTCTCGCATGGTTCTTGTATCATTGCCACATTCATAAGTACCCATCCaa > 2:323316/1‑143 (MQ=255) aTCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTATCGCATAATAAATGAATAATTGCCACATTCATAAGTACACATCCCagag > 1:156848/1‑143 (MQ=255) gcAGGGACAGCGGCGTTTTCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCa < 2:20428/142‑1 (MQ=255) aCAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTa > 1:482430/1‑143 (MQ=255) cgTGATCTGGCTCTGGAGAAAGCTTATAACAGAGGATATCCGCGCATGGTGCTTGGTTATCCGCAAACAGACCCGACTCTCGCATGGTTCTTGGCGCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCa < 1:66373/143‑1 (MQ=255) aTCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCAAGGTGATTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTAACAATCCGAGAGCAGGATTATTCAcatgggg > 2:458553/1‑137 (MQ=255) ctctGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGAAAACCGCAGACAGACCCGACTCTCGCATGGTTCTTGTCTCATGGCCACATTCAAAAGTACCGCTCAACGAGCACGCTTATTCACCAGGGAGaaaca > 2:376997/1‑141 (MQ=255) ttGGAGAAAGCTTATAACAGACGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGc < 2:24805/142‑1 (MQ=255) cTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTGCTGTTCGCATTGACACATTCATAAGTACCCATCCAAGAGCACGCATATTGACCAGGGTGAACAAGAGGAAACgagg > 2:363261/1‑140 (MQ=255) atataACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCAAATTCATAAGTAACAATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGATGt > 1:270438/2‑143 (MQ=255) gacgATAACCGCGCATGGTGCTTCGCAAACCGCAAACAGACCCGACGCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCAGCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATc < 2:384711/140‑1 (MQ=255) aagGATAACCGCGCATGGTGCTTGGCAATTCTCAAACATACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATc < 1:148382/142‑1 (MQ=255) ggCTTGCCAAGCCCTATACTGACCCGACTCTCGCATGGTTTTTGTCTCATTGCCACATTCATATGTACCCATCCAAGAGTACGCTTATTCACCAGGGTGAAAAAGCGGAAATGCTGTACTACATCGTTAAAGGCTCTGTGGCa < 2:37731/142‑1 (MQ=255) cTTGGCAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAAAACCAATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTAAACCGTAAAAGGCTCTGTGGCGGt > 1:117355/1‑143 (MQ=255) cAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAATTATCCATCCAAGAGCACGCTTATGCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGa < 1:79493/143‑1 (MQ=255) cAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTATCCATCCAACAGCACGCTTATTCACCAAAATAAAAAAAAAGAAAAGCTGTACTACATAGATAAAAAGTCTGAGGCAGtgatga > 1:55389/1‑143 (MQ=255) cAAACCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCAACAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGa > 1:428502/1‑143 (MQ=255) aaaCCGCAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAAGGTGCAAAAGCGGAAACGCTGTACTCAATCGATAAAGGCTCAGTGGCCGCGCTgca > 2:295332/1‑141 (MQ=255) ccacAAACAGACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCaa < 2:353604/140‑1 (MQ=255) cGCAAACATACCCGACTCTCGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCTATCCTAGTGTTTTTTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCaaa < 1:153062/143‑1 (MQ=255) cccaCCCGACTCTCGCACCGCTCTCGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCTGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGaa < 2:68891/140‑1 (MQ=255) tcGCATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCACGGTGAAAAAGCGTAAACGCTGTACTACATCATTAAAAACTCTATAGCAGTGCTGATCAAAGACGAAGAGGGTAAAGaa > 1:178504/1‑143 (MQ=255) | AGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAA > NC_000913/3486024‑3486296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |